vcfdist: Accurately benchmarking phased variant calls

Bioinformatics on GCP, AWS or Azure

A tutorial on structural variant calling for short read sequencing data

Tool to estimate deltas for sequence sets and answer questions about relative contribution

Comprehensive design of CRISPR gRNAs for nucleases and base editors

A web application for interactive visualization and exploratory data analysis of variant call matrices

FinaleToolkit is a package and standalone program to extract fragmentation features of cell-free DNA from paired-end sequencing data.

gapped-kmer based whole genome alignment software

This repository serves as a valuable resource for individuals engaged in data exploration, statistical analysis, and research within the domains of plant breeding, genetics, statistics, and genomics. The purpose of this repository is to share a collection of R codes that can be utilized by others for their own data analysis projects

Structural variant calling tutorial using long-reads.

Analysis of SNP variants, derived from chip array genotyping and HTS sequencing

This repository houses the Genomic Sequence Comparison Code (GSCC), a collection of Python scripts designed for genomic sequence analysis. Whether you're comparing suspected sequences with known reference sequences or delving into bioinformatics, GSCC provides versatile tools for pairwise alignment. Feel free to explore!

A GLUE project for hepatitis B virus (HBV).

R package for annotating and parsing transposable elements-associated data

An antimicrobial resistance (AMR) dashboard.

Machine Learning in Omics: Integration of Metagenomics and Metabolomics.

Supervised classification of various species DNA sequences using FFT and Machine Learning.

Final Exam for Coursera's Python for Genomic Data Science course

This repository contains the file codes used to complete the final project for the course Post Genomic Analysis.

NLR-Assembler is a command line tool for improving RenSeq Assemblies using linked-read sequencing by 10x Genomics.