Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls

A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles.

🔧 Simple script in python to convert CSV files to VCF

Bioinformatics on GCP, AWS or Azure

Intersect multiple VCF files with haplotype awareness

🐍 DRAGEN Tumor/Normal workflow post-processing

PySeqArray: data manipulation of whole-genome sequencing variants with SeqArray files in Python (pre-release version)

An implementation of a generic ArrayList and a generic LinkedList in cpp which can store multiple data type variables.

COVID-19 Variants Repository

From second generation sequencing reads to variant calls