List of Computer Science courses with video lectures.

Data Apps & Dashboards for Python. No JavaScript Required.

Official git repository for Biopython (originally converted from CVS)

A curated list of awesome Bioinformatics libraries and software.

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

A DSL for data-driven computational pipelines

Making Protein folding accessible to all!

Single-cell analysis in Python. Scales to >100M cells.

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

A versatile pairwise aligner for genomic and spliced nucleotide sequences

A full spaCy pipeline and models for scientific/biomedical documents.

Official code repository for GATK versions 4 and up

MMseqs2: ultra fast and sensitive search and clustering suite

Conda recipes for the bioconda channel.

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

Data intensive science for everyone.

Toolkit for processing sequences in FASTA/Q formats

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation

Aggregate results from bioinformatics analyses across many samples into a single report.