Proteomics search & quantification so fast that it feels like magic
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Oct 30, 2024 - Rust
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Bioinformatics
Bioinformatics is an interdisciplinary field that intersects with biology, computer science, mathematics and statistics. It concerns itself with the development and use of methods and software tools for collecting and analyzing biological data.
Here are 214 public repositories matching this topic...
Randomly subsample sequencing reads or alignments
rust
coverage
bioinformatics
random
alignment
fasta
bam
fastq
genome-analysis
downsample
subsampling
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Sep 12, 2024 - Rust
Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.
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Jul 14, 2024 - Rust
Bam Error Stats Tool (best): analysis of error types in aligned reads.
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Feb 27, 2024 - Rust
Cute tricks for SIMD vectorized binary encoding and decoding of nucleotides, in Rust.
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Dec 30, 2020 - Rust
Command line utility for manipulating Illumina-generated FASTQ files.
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Jul 8, 2024 - Rust
👷 Fasten toolkit, for streaming operations on fastq files
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Feb 22, 2024 - Rust
Compacted and colored de Bruijn graph construction and querying
rust
bioinformatics
sequencing
bioinformatics-pipeline
genome-assembly
de-novo-assembly
debruijn-graph
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Nov 1, 2024 - Rust
Yet Another Chimeric Read Detector
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Aug 12, 2022 - Rust
Rust bindings to minimap2 library
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Aug 20, 2024 - Rust
Read specialized NGS formats as data frames in R, Python, and more.
python
data-science
bioinformatics
r
genomics
ngs
pandas
rust-lang
dataframe
fair-data
apache-arrow
multiomics
polars
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Jun 30, 2024 - Rust
Benchmarking different languages for a simple bioinformatics task (Counting the GC fraction of DNA in a FASTA file)
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Jan 28, 2023 - Rust