SPAdes Genome Assembler
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Updated
Sep 26, 2024 - C++
SPAdes Genome Assembler
Ultra-fast and memory-efficient (meta-)genome assembler
Signal-level algorithms for MinION data
Tools for fast and flexible genome assembly scaffolding and improvement
Fast and accurate de novo assembler for long reads
Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also included in this package.
Viral genomics analysis pipelines
RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
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Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes
De novo genome assembly and multisample variant calling
A bioinformatic toolkit to align genome assemblies into pangenome graphs
A fast tool for hybrid genome assembly of long and short reads
Compacted and colored de Bruijn graph construction and querying
Detailed bioinformatics scripts and methods used in the NAM genome paper.
Long-reads Gap-free Chromosome-scale Assembler
Learning to untangle genome assembly with graph neural networks.
H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)
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