A fast whole-genome aligner based on de Bruijn graphs

De novo genome assembly and multisample variant calling

Core library of the Genome Analysis Toolbox with de-Bruijn graph

Fulgor is a fast and space-efficient colored de Bruijn graph index.

A fast constructor of the compressed de Bruijn graph from many genomes

ProphAsm – a rapid computation of simplitigs directly from k-mer sets

Find bubbles in the Colored de Bruijn Graph to reconstruct phylogenetic trees

GeneMiner: a tool for extracting phylogenetic markers from next-generation sequencing data

Hybrid method based on a variable-order de bruijn Graph for the error Correction of Long Reads

Germline DNM caller based on LdBG assembly of pathogens

Streaming de Bruijn and Compact de Bruijn Graph Algorithms

Sparse Binary Relation Representations for Genome Graph Annotation

Computational programs and algorithms used to convert information from biochemical experiments (DNA/RNA/Protein/DNA chip/NGS) into useful information and data.

Computational Biology Assignments

Enumerates Conway's Game of Life's "still lifes" (fixed points) via De Bruijn diagrams. Caml light implementation (boo !)

A program which can assembing .fasta file generated by Next Generation Sequencing(NGS) de novo using De Bruijn Graph Algorithm, and can also choose to map(BLAST) the contigs to a reference sequence

Genome assembler de novo that uses De Bruijn graph.

Data Analysis for Genomics, De Bruijn Graph for Genome Assembly.

Souce code for my MSc Thesis in Computer Science “Nested Marvellous Sequences”

What I learned from Data Structures and Algorithms Specialization on Coursera.