Discussions

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  Spinning up child pods in a different namespace

  executor/k8s

  Vignesh-Kathirkamar asked Sep 4, 2024 in Q&A · Unanswered

  

  

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  cpus and sge error

  executor/sge

  ylluX asked Aug 12, 2024 in Q&A · Unanswered

  

  

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  SGE syntax

  executor/sge

  DustinSokolowski asked Aug 16, 2024 in Q&A · Unanswered

  

  

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  Running into out of memory issues when working with a large number of files.

  software/java

  karthikram-takara asked Feb 1, 2024 in Q&A · Answered

  

  

  

  

  14
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  Feature Request: support diskEncryptionKey/KmsKey for google batch executor

  livanaz started Aug 27, 2024 in Ideas

  

  

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  Disable task parallelism

  raygozag started Jul 22, 2024 in General

  

  

  

  

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  Spot instances per process in GCP

  executor/google-batch

  mizue31g asked Aug 23, 2024 in Q&A · Unanswered

  

  

  

  

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  Unable to dump output of process 'xxx' -- Cause: java.nio.file.NoSuchFileException .command.out/.command.err

  software/conda

  Tong-Chen asked May 28, 2023 in Q&A · Unanswered

  

  

  

  

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  How to select different processes based on the number of files in channel.fromPath?

  ChenDepp asked Aug 24, 2024 in Q&A · Unanswered

  

  

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  Import AGeNT in sarek

  RP-Bioinfo started Aug 26, 2024 in General · Closed

  

  

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  Nextflow on SGE

  executor/sge

  tanyasarkjain asked Aug 22, 2024 in Q&A · Unanswered

  

  

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  Trouble running nextflow with SGE

  tanyasarkjain asked Aug 22, 2024 in Q&A · Unanswered

  

  

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  eliminating Apptainer cache duplication

  tmoughamer asked Aug 13, 2024 in Q&A · Closed · Unanswered

  

  

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  Google Batch: /usr/bin/fusermount: fuse device not found, try 'modprobe fuse' first

  VasLem asked Aug 17, 2024 in Q&A · Answered

  

  

  4
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  Feature request: recognize requeued jobs in SLURM

  executor/slurm

  Hoeze asked Jan 24, 2023 in Q&A · Unanswered

  

  

  

  

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  Bowtie2 mapping script in Nextflow Pipeline fails to execute

  unikill066 asked Aug 12, 2024 in Q&A · Closed · Unanswered

  

  

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  Cannot set up NXF variable for nextflow kuberun [kubernetes]

  executor/k8s

  xsvato01 asked Aug 7, 2024 in Q&A · Unanswered

  

  

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  Should -resume always resubmit processes that failed but had errorStrategy set to ignore?

  chasemc asked Jun 29, 2023 in Q&A · Unanswered

  

  

  

  

  4
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  Very confused about module binaries

  davidmasp asked Aug 5, 2024 in Q&A · Answered

  

  

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  How can I ensure that processes respect the order of a queue channel?

  Subject-13 asked Jul 20, 2024 in Q&A · Answered

  

  

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  nextflow inspect not working with nf-core pipelines

  stevekm asked Jul 26, 2024 in Q&A · Unanswered

  

  

  

  

  5
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  Error finding Python in HPC environment

  jreimertz asked Jul 24, 2024 in Q&A · Answered

  

  

  

  

  9
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  I am trying to use S3 of LocalStack with Nextflow but I got runtime error.

  spksoft asked Jul 28, 2024 in Q&A · Unanswered

  

  

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  Multiple subworkflow executions

  PeterP-GH asked Jul 24, 2024 in Q&A · Answered

  

  

  

  

  7
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  Google Cloud Batch executor with private IPs

  siddharthab started Jul 25, 2024 in General

  

  

  2