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@giffordlabcvr

Rob J. Gifford Lab

Comparative Virus Research | Collaborative Virus Research

Overview

The Gifford Lab conducts scientific investigations into the evolution of viruses and their impact on host species.

Research themes include:

  • Long-term evolution of viruses: Exploring how viruses evolve over extended timescales.
  • Origins and emergence of viral pathogens: Investigating the evolutionary history and cross-species transmission events that give rise to new viral pathogens.
  • Impact of viruses on host species evolution: Examining how interactions with viruses shapes the evolution of host species.
  • Paleovirology: Uncovering the ancient interactions between viruses and hosts through the study of endogenous viral elements (EVEs).

Software & Resources

We are dedicated to advancing comparative genomics by creating open resources that promote collaborative research.

Our main focus is the GLUE software framework and various genomics resources developed using this framework.

We have also developed the DIGS tool - a framework for performing systematic in silico genome screening.

Pinned Loading

  1. gluetools Public

    An open, platform-independent software toolkit for storage and interpretation of sequence data, implemented in Java.

    Java 12 2

  2. RABV-GLUE Public

    A GLUE project for Rabies Virus (RABV).

    JavaScript 2

  3. Dengue-GLUE Public

    A GLUE project for dengue virus (DENV)

    JavaScript

  4. HCV-GLUE Public

    A GLUE project for Hepatitis C virus (HCV)

    F* 2

  5. DIGS-tool Public

    Database-Integrated Genome Screening (DIGS) tool. Explore the dark genome using BLAST and a relational database.

    Perl 11 6

  6. WNV-GLUE Public

    A GLUE project for West Nile virus (WNV)

    JavaScript

Repositories

Showing 10 of 50 repositories
  • NCBI-HCV-GLUE Public

    Extension to HCV-GLUE - contains all published HCV data from NCBI, plus analysis logic for HCV genomes.

    JavaScript 0 0 0 0 Updated Mar 24, 2025
  • RVdb Public

    A GLUE project for retroviruses (family Retroviridae)

    JavaScript 0 0 0 0 Updated Mar 21, 2025
  • Parvovirus-GLUE-EVE Public

    Extension to Parvovirus-GLUE - incorporates endogenous parvoviral elements (EPVs)

    JavaScript 0 0 0 0 Updated Feb 22, 2025
  • IFNL-Evolution Public

    Resources supporting comparative and phylogenetic analysis of IFNL genes

    JavaScript 0 0 0 0 Updated Jan 25, 2025
  • HMPV-GLUE Public

    A GLUE project for human metapneumovirus (HMPV)

    JavaScript 0 GPL-3.0 0 0 0 Updated Jan 10, 2025
  • gluetools Public

    An open, platform-independent software toolkit for storage and interpretation of sequence data, implemented in Java.

    Java 12 2 1 0 Updated Jan 9, 2025
  • AAV-Atlas Public

    An atlas of AAV genetic variants

    JavaScript 0 0 0 0 Updated Jan 9, 2025
  • Parvovirus-GLUE Public

    A GLUE project for comparative genomic analysis of parvoviruses

    JavaScript 1 0 0 0 Updated Jan 5, 2025
  • WNV-GLUE Public

    A GLUE project for West Nile virus (WNV)

    JavaScript 0 0 0 0 Updated Dec 21, 2024
  • Lentivirus-GLUE-FIV Public

    Extension to Lentivirus-GLUE - contains all published feline lentivirus data from NCBI

    JavaScript 0 GPL-3.0 0 0 0 Updated Dec 17, 2024

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