Informal summaries of notable SARS-CoV-2 lineages
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Nov 4, 2024
#
virus-evolution
Here are 38 public repositories matching this topic...
The best virus collection you will find, ever.
virus
visual-basic
malware
danger
hacking
trojan
dangerous
ransomware
spyware
viruses
virus-evolution
computer-virus
virus-collection
computervirus
viruscollection
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Apr 10, 2024 - C++
Cenote-Taker2: Discover and Annotate Divergent Viral Contigs (Please use Cenote-Taker 3 instead)
virus
annotation
discovery
genbank
hhblits
hhsearch
metagenomes
virome
virus-discovery
prophage
hallmark
virus-evolution
cenote-taker2
prophage-prediction
virus-sequences
cenote-unlimited-breadsticks
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Jan 19, 2024 - Shell
Nextstrain build for mpox virus
metadata
bioinformatics
pipeline
pathogen
phylogenetics
genbank
augur
nextstrain
auspice
virus-evolution
genomic-epidemiology
monkeypox
mpox
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Nov 4, 2024 - Python
An open-source pathogen sequence database dedicated to equitable sharing, transparent governance, & empowering global public health.
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Nov 5, 2024 - MDX
Official place for proposals and details around monkeypox virus lineage designations
bioinformatics
phylogenetics
virus-evolution
genomic-epidemiology
outbreak-investigation
monkeypox
monkeypox-data
monkeypox-lineages
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Nov 5, 2024 - Python
An open, platform-independent software toolkit for storage and interpretation of sequence data, implemented in Java.
genomics
reproducible-research
microbial-genomics
comparative-genomics
sequence-analysis
virus-evolution
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Oct 13, 2024 - Java
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Nov 1, 2024 - Python
A Snakemake workflow for SARS-CoV-2 Viral Intra-Patient Evolution Reporting and Analysis
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Apr 17, 2024 - Python
BA.2.86 project with Sigal lab
bioinformatics
snakemake
computational-biology
phylogenetics
nextstrain
treetime
sars-cov-2
virus-evolution
genomic-epidemiology
sars-cov-2-variants
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Nov 8, 2023 - Python
A GLUE project for SARS-COV2, focused on genetic variation.
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Jun 3, 2021
VirSim: a simulation tool for the spread of a Virus within a population
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Nov 4, 2024 - Scala
A GLUE project for comparative genomic analysis of flaviviruses
bioinformatics
reproducible-research
glue
open-science
comparative-genomics
virus-evolution
flavivirus
paleovirology
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Sep 27, 2024 - JavaScript
Scripts and data for the CoVaRR-Net Pillar 6 notebook
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Nov 4, 2024 - HTML
A GLUE project for hepatitis B virus (HBV).
bioinformatics
genomics
hepatitis
drug-resistance
sequence-analysis
sequence-annotation
virus-evolution
genomics-analysis
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Sep 10, 2024 - JavaScript
Repository to discuss SARS-CoV-2 sequence quality
bioinformatics
quality-control
genomics
sequencing-error
sars-cov-2
virus-evolution
sequencing-data
sars-cov-2-variants
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Jan 21, 2024
A GLUE project for comparative genomic analysis of parvoviruses
reproducible-research
glue
open-science
comparative-genomics
aav
gene-therapy
virus-evolution
paleovirology
parvovirus
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Oct 30, 2024 - JavaScript
Extension to HBV-GLUE - incorporates all sequences from GenBank.
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May 23, 2024
Automate Cellulaire pour modéliser la propagation de Virus
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Apr 19, 2024 - Python
A GLUE project for Hepatitis C virus (HCV)
docker
bioinformatics-databases
drug-resistance
antiviral-resistance
hepatitis-c
virus-evolution
virus-genomes
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Oct 1, 2024 - F*
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