10.1

Release Notes

This release includes major package upgrades; new development tools

What's Changed

• Some fixes for Specht modules and diagrams by @tscrim in #35432
• Implement down-up algebras and their Verma modules by @tscrim in #35484
• sage.rings.factorint: Modularization fixes by @mkoeppe in #35502
• Deprecate is_SymbolicVariable, is_SymbolicEquation by @mkoeppe in #35505
• Some cython-linting in modular/ folder by @fchapoton in #35516
• Make rank return an Integer object by @kryzar in #35519
• src/sage_docbuild/conf.py: Do not fail if pplpy doc is not installed by @mkoeppe in #35536
• For groups: generic centralizer, subgroup methods; improving center by @tscrim in #35540
• Review of #35540 by @dwbump in #35547
• Fvector for fans by @fchapoton in #35548
• Fixing some pycodestyle warnings E251 by @fchapoton in #35549
• Removing some unused imports in cython files by @fchapoton in #35550
• Enable access to some methods in sage/graphs/graph_decompositions by @dcoudert in #35551
• cython-lint cleaning in combinat/ by @fchapoton in #35553
• Make doc preview message from github bot one liner by @kwankyu in #35563
• Replace obsolescent egrep by @fchapoton in #35565
• Partial cython-lint in plot folder by @fchapoton in #35566
• 4ti2: Update to 1.6.10, fixes egrep issue, adds GCC 13 support by @mkoeppe in #35570
• Some details in posets by @fchapoton in #35573
• Support tox 4.x for testing modularized distributions by @mkoeppe in #35208
• Implement the logarithm and the exponential of a Drinfeld module by @DavidAyotte in #35260
• Add a few operations from linear symplectic geometry by @tobiasdiez in #35354
• openblas: Update to 0.3.23 by @mkoeppe in #35371
• The Fusion Ring of the Drinfeld Double of a Finite Group by @dwbump in #35387
• Remove tag fetching in docker workflow by @tobiasdiez in #35417
• sage.categories: Add # optional for modularization; reformat doctests by @mkoeppe in #35422
• Adding bigraded Betti numbers functionality by @OP5642 in #35430
• Add ability to generate graphs based on correlations of sequences #25933 by @Bruno-TT in #35009
• src/doc/en/developer/portability_testing.rst: Update after migration by @mkoeppe in #35108
• Add parallel algorithm to Graph chromatic_number by @dcoudert in #35145
• Some typing and code tweaks in MZV by @fchapoton in #35567
• Details on complex reflection groups by @fchapoton in #35574
• Some details in commutative dga by @fchapoton in #35575
• Simplify some trivial iterations by @fchapoton in #35576
• Refactor: outsource methods in combinatorial polyhedron by @kliem in #35577
• Refactor: improve initialization of combinatorial polyhedron by @kliem in #35578
• sage.{topology,homology}: Modularization fixes by @mkoeppe in #35581
• Fix discrepancy in partitions between provided number and starting partition by @trevorkarn in #35582
• Support networkx 3.1 by @tornaria in #35584
• sage.geometry: Add some # optional, reformat doctests by @mkoeppe in #35586
• bootstrap-conda: Skip the dummy package _sagemath by @mkoeppe in #35589
• Implement twisted affine Lie algebras by @tscrim in #35591
• Fix Max=Min warning in coin interacts by @tobiasdiez in #35596
• Remove global sage.all import in pytest by @tobiasdiez in #35598
• src/doc/common/python3.inv: Update by @mkoeppe in #35608
• Check for empty string before trying to evaluate in _element_constructor by @nbruin in #35610
• Support linbox 1.7.0 and 1.6.3 at the same time by @tornaria in #35612
• Upgrade Maxima to 5.46.0 by @dimpase in #35619
• Animation.ffmpeg: Shell-quote filenames by @mkoeppe in #35622
• cython-linting of unused imports in modules and dynamics by @fchapoton in #35623
• Remove jupyter-packaging for conda by @tobiasdiez in #35627
• Implement the octonions by @tscrim in #35630
• Simplify some all(all(...)) in combinat and geometry by @fchapoton in #35631
• Use fixed random-seed in the "Build & Test" CI by @tobiasdiez in #35632
• Activating more pycodestyle checks by @fchapoton in #35634
• Support sympy 1.12 by @tornaria in #35635
• Fix typo in documentation by @antonmosich in #35641
• Avoid redundant computations in finite field .conjugate() method by @remyoudompheng in #35643
• sage.graphs: More # optional and other modularization fixes by @mkoeppe in #35647
• pkg-config should be _bootstrap, not _prereq, on all distros by @mkoeppe in #35407
• sage.rings: Reformat doctests, add # optional annotations by @mkoeppe in #35457
• Clear up left right confusion in ore_polynomial_element.pyx by @kwankyu in #35562
• Make EllipticCurve.lift_x() deterministic by @yyyyx4 in #35644
• Remove abuse of predefined x in doctests by @mkoeppe in #35648
• Fix bug caused by cached representation in cohomology classes by @miguelmarco in #35650
• Installation guide: Document workaround for Jupyter server port clash on WSL by @mkoeppe in #35651
• Cleanup and details in finite_word.py by @fchapoton in #35657
• Fix build with sphinx 7 by @antonio-rojas in #35658
• CI Linux: Update platforms by @mkoeppe in #35660
• SymPy 1.12 upgrade by @mkoeppe in #35662
• Changing the knot theory PD-code convention by @soehms in #35665
• cython-lint: removing unused imports in polynomials by @fchapoton in #35672
• cylint: remove unused imports in pyx files in folders a*-geo* by @fchapoton in #35673
• cylint: remove unused imports in graphs, groups, interacts by @fchapoton in #35674
• cylint: remove unused imports in matrix folder by @fchapoton in #35675
• Some pep8 in elliptic curves by @fchapoton in #35677
• Fix building the Singular docstring dict when Singular info is built with recent texinfo by @antonio-rojas in #35678
• Register magic modes for lazy imported interfaces by @miguelmarco in #35680
• Deprecation warning for #34880 by @yyyyx4 in #35683
• Unify input of matrices and vectors by @dkrenn in #35685
• Fixing a lot of pycostyle warnings in calculus folder by @fchapoton in #35686
• Some fixes for pycodestyle E275 by @fchapoton in #35687
• cython-lint: removed many unused imports in rings/ by @fchapoton in #35688
• cylint: remove unused imports in folders [s-z]* by @fchapoton in #35689
• Correct spelling in permgroup_named: Diyclic => Dicyclic by @dwbump in #35694
• Fix incorrect linear branch number for non-invertible SBox by @rusydi in #35695
• cylint: remove imports in misc/ by @fchapoton in #35697
• Fix corner case of ordered set partitions iteration by @videlec in #35700
• GAP: fix definition of 'Int' by @fingolfin in #35701
• tox.ini / GH Actions: Remove gentoo-python3.9 by @sheerluck in #35705
• New workflow for synchronization of labels by @soehms in #35172
• Adding support for subschemes in _is_preperiodic by @MatheMagicianPi in #35483
• Add "informational: true" to .codecov.yml by @kwankyu in #35544
• Laurent polynomial/series modularization fixes by @mkoeppe in #35554
• Implementing the Casimir elements of a finite dimensional Lie algebra by @tscrim in #35590
• Sparse strategies for composite elliptic-curve isogenies by @yyyyx4 in #34965
• GenericGraph.adjacency_matrix: using sort=True when getting vertices by @cyrilbouvier in #35245
• Some cython-linting in quadratic forms by @fchapoton in #35709
• Fix all pep8 E251 in combinat by @fchapoton in #35711
• Fix pep8 E251 in rings/ by @fchapoton in #35712
• Provide matrix_symbolic_sparse class by @dimpase in #35714
• sage.graphs: More modularization by @mkoeppe in #35718
• cython-lint for imports in rings (mostly in padics) by @fchapoton in #35721
• cython-lint for imports in libs/ by @fchapoton in #35722
• Some pep8 cleanup in rigged_configurations by @fchapoton in #35723
• build/pkgs/pyflakes: Remove by @mkoeppe in #35731
• More uses of yield from by @fchapoton in #35733
• build/pkgs/maxima: Fix parallel build by @mkoeppe in #35737
• configure: Remove stray stdin.info file created in test by @mkoeppe in #35738
• Avoid computation of Conway polynomials when comparing elliptic-curve morphisms by @yyyyx4 in #35494
• Allow non-minimal equation for padic heights by @chriswuthrich in #35614
• Update the rank function of elliptic curves to use ellrank in pari by @chriswuthrich in #35626
• Upgrade networkx to 3.1, igraph/python_igraph to 0.10.4 by @mkoeppe in #35671
• ⬆️ Bump myrotvorets/set-commit-status-action from 1.1.6 to 1.1.7 by @dependabot in #35692
• GAP: switch some code to use official libgap APIs by @fingolfin in #35702
• Fix pep8 E251 in categories, coding, crypto, logic by @fchapoton in #35710
• Update symengine(_py) to versions 0.10.0 and 0.10.1 by @dimpase in #35713
• Fix the linter and add more checks by @fchapoton in #35720
• Remove obsolete .zenodo.json* files, update CITATION.cff to fix zenodo/DOI by @dimpase in #35666
• .github/workflows/docker.yml: Remove defunct steps that refer to Trac by @mkoeppe in #35739
• Clarification on the MAX_MODULUS of float matrices modulo n by @marizee in #35752
• Remove deprecated in #32894 python module interfaces/primecount by @dimpase in #35754
• Implementing the type B Ish arrangement. by @tscrim in #35757
• sage.matrix.misc: Split by library dependency by @mkoeppe in #35758
• GAP: adapt get_global to use official libgap API by @fingolfin in #35760
• Fix all remaining E251 warnings by @fchapoton in #35764
• More fixes for superfluous cython imports by @fchapoton in #35765
• Fixing most E222 warnings in py files by @fchapoton in #35766
• Fix most E301 warnings by @fchapoton in #35768
• cylint: remove some unused variables in rings/ by @fchapoton in #35770
• Getting rid of many uses of xrange in pyx files by @fchapoton in #35772
• Document that GLPK/exact can be inexact by @ed359 in #35773
• cylint: no more xrange in matroids by @fchapoton in #35776
• Reduce dependency to rainbow in sage.graphs.graph_coloring by @dcoudert in #35780
• Adjust random tests for generators of elliptic curves by @chriswuthrich in #35787
• Doctester: Check for consistency of # optional annotations by @mkoeppe in #35620
• Implement the exceptional Jordan algebra by @tscrim in #35629
• CI Build & Test: First build incrementally and test changed files only by @mkoeppe in #35652
• sage.matroids: Modularization fixes by @mkoeppe in #35719
• Fix some pep8 warnings in modform_hecketriangle by @fchapoton in #35724
• New feature annotations # optional - sage.schemes sage.modular sage.libs.flint etc. by @mkoeppe in #35728
• sage.coding: Modularization fixes, doctest cosmetics, add # optional by @mkoeppe in #35729
• Little refreshment of code in Weyl groups by @fchapoton in #35730
• Reference manual: Show modularized sagelib packages separately by @mkoeppe in #35734
• GAP: use CALL_WITH_STREAM to redirect output to string by @fingolfin in #35735
• sage.combinat: Split some Cython modules (modularization fixes) by @mkoeppe in #35741
• Add a note on a doctest that randomly behaves by @kwankyu in #35751
• GAP: fix a comment by @fingolfin in #35759
• sage.misc.misc, sage.combinat: Modularization fixes by @mkoeppe in #35564
• Add a WSL prerequisites section by @Daniel-Khodabakhsh in #35843
• Correct deprecation messages by @dimpase in #35854
• Extend MAX_MODULUS of matrix_modn_dense_double.pyx by @marizee in #35855
• Russian notation for tableaux and minor bug fix by @thecaligarmo in #35645
• Make Sage work with maxima 5.47 by @antonio-rojas in #35707
• sage.combinat: More # optional annotations by @mkoeppe in #35742
• Fix optional SnapPy doctests after #35665 by @soehms in #35755
• GAP: switch more code to offical libgap APIs by @fingolfin in #35761
• Modularization fixes for fast_callable interpreters by @mkoeppe in #35774
• Allow partial result in minimal_model, and translate OS-algebra to cdga by @miguelmarco in #35782
• build/pkgs/onetbb: Add distros/opensuse.txt by @mkoeppe in #35785
• More arguments for simplify by @fchapoton in #35789
• Cleaning some things remaining from python 2 by @fchapoton in #35792
• tox.ini, .github/workflows/docker.yml: Add almalinux by @mkoeppe in #35794
• Fix copyright headers in function fields by @kwankyu in #35795
• Replace imports from sage.geometry...all, update relint pattern by @mkoeppe in #35798
• GAP: use libgap API for int conversion by @fingolfin in #35805
• .github/workflows/doc-build.yml: Fix generation of CHANGES.html by @mkoeppe in #35808
• Ensure GCD in normalize_coordinates for projective morphisms by @guojing0 in #35809
• sage.misc.timing: Split out from sage.misc.misc by @mkoeppe in #35816
• Fully get rid of xrange() in pyx files by @fchapoton in #35818
• Advance the linter (add more checks) by @fchapoton in #35819
• sage.features: Declare features as "standard" explicitly by @mkoeppe in #35820
• Most cython-lint suggestions fixed in algebras/ by @fchapoton in #35822
• Fixes to support numpy 1.25.0 by @tornaria in #35826
• Some pep8 fixes in symbolic (E305 and others) by @fchapoton in #35827
• Support setuptools 68.0.0 by @tornaria in #35831
• Fix tests with scipy 1.11 by @antonio-rojas in #35842
• Remove mention of defunct magic command "%bg" from the tutorial by @jhpalmieri in #35850
• Update to bliss 0.77 by @antonio-rojas in #35344
• sage -docbuild all FORMAT: Run make doc-FORMAT by @mkoeppe in #35604
• Hide features (PR to migrated Trac ticket #34185) by @soehms in #35668
• pkgs/*/setup.cfg: Reduce boilerplate by m4-include, reduce complexity of m4 use by @mkoeppe in #35867
• Correct parent for square root of constant polynomial by @DaveWitteMorris in #35876
• cython-lint: some care for groups/perm_gps by @fchapoton in #35877
• Various cython-lint fixes in algebras, arith, calculus, categories by @fchapoton in #35879
• cylint: some fixes in combinat/(crystals,matrices,words) by @fchapoton in #35880
• Fixing some pep8 warnings in schemes/toric by @fchapoton in #35892
• GAP: make libgap APIs for function calls available by @fingolfin in #35895
• Fix some pep8 in symbolic folder by @fchapoton in #35910
• PEP8 in repl by @fchapoton in #35911
• Removed warning no longer relevant since #21212 by @edgarcosta in #35912
• Fix weak Popov form testing by @vneiger in #35699
• Change Rational's round method default rounding from away to even by @vneiger in #35756
• Full pep8 for preparser + little refreshing by @fchapoton in #35783
• Implementing Golod complexes by @OP5642 in #35802
• Decouple tuple by @deinst in #35812
• Fix tests for singular 4.3.2p2 by @tornaria in #35825
• Some pep8 for E272 in quadratic forms by @fchapoton in #35834
• Integer.{perfect_power,is_prime_power,is_irreducible}: Handle easy cases without PARI by @mkoeppe in #35847
• Fix typos on the link to the walkthrough.html by @Jun-Hee-Lee in #35852
• GAP: stop using T_CHAR by @fingolfin in #35863
• CI build.yml, doc-build.yml: Fix handling of added files by @mkoeppe in #35865
• Minor typo in Category documentation by @thecaligarmo in #35868
• Put the actual description first in issue templates by @mezzarobba in #35295
• cylint: clean the file ternary.pyx by @fchapoton in #35925
• Update mpmath to 1.3.0 by @dimpase in #35929
• cython-lint for imports in rings by @fchapoton in #35937
• bootstrap: Accept SPKG arguments by @mkoeppe in #35950
• sage.combinat.cluster_algebra_quiver: Modularization fixes, update # needs by @mkoeppe in #35951
• Links for Python standard errors using class role in src/doc by @fchapoton in #35955
• Return the points in the ring of integers after renormalization by @guojing0 in #35778
• Add rooted product of graphs by @dcoudert in #35824
• Update barvinok to 0.41.7, add upstream_url by @dimpase in #35839
• Deprecate some imports by @jhpalmieri in #35841
• Allow sphinx <= 7.x and other conda related improvements by @tobiasdiez in #35845
• Return connected subgraphs with exactly k vertices by @deinst in #35864
• GAP: switch to libgap API for GAP function calls by @fingolfin in #35887
• Invariants are now linearly independent by @Bruno-TT in #35899
• Some pep8 fixes in homology/ by @fchapoton in #35908
• Some pep8 fixes in topology/ by @fchapoton in #35909
• Is fully commutative for Coxeter group elements by @fchapoton in #35915
• Some pep8 cleanup in schemes/affine and schemes/curves by @fchapoton in #35916
• Some pep8 fixes in combinat by @fchapoton in #35917
• pep8 cleanup in modular/btquotients and modular/modsym by @fchapoton in #35918
• sage.matroids: Update # needs, modularization fixes for imports by @mkoeppe in #35919
• Replace basestring by str in Cython files by @fchapoton in #35920
• Python-style syntax for loops in lean_matrix.pyx by @fchapoton in #35921
• Using python-style loops in plot3d/*.pyx by @fchapoton in #35922
• Some pycodestyle fixes in sets/ by @fchapoton in #35923
• Some pep8 fixes in functions/ by @fchapoton in #35924
• First sketch for callable factorisations by @fchapoton in #35928
• cython-lint: full fix in cpython/ probability/ media/ and sat/ folders by @fchapoton in #35931
• Fix and activate pycodestyle E252 by @fchapoton in #35940
• Improve morphisms between Drinfeld modules by @xcaruso in #35527
• Guessing k-regular sequences by @dkrenn in #35682
• sage.groups.perm_gps.partn_ref*: Modularization fixes by @mkoeppe in #35881
• Deprecate sorting by default in connected component methods for graphs by @dcoudert in #35891
• Deal with bad chosen representations of k-regular sequences by @dkrenn in #35896
• complex_dynamics, fix: mandelbrot_plot throws exception for z^2*(z-c) + c by @ForrestHilton in #35900
• Make SubgraphSearch robust to vertex labels by @dcoudert in #35904
• sage.combinat.designs: Modularization fixes, update # needs by @mkoeppe in #35943
• Fix several issues in find_hamiltonian by @dcoudert in #35956
• sage.rings.function_field: Update # needs by @mkoeppe in #35957
• Fix documentation formatting problem: kRegularSequence.partial_sums by @cheuberg in #35962
• Minor changes in is_chordal by @dcoudert in #35965
• src/sage/schemes/projective/proj_bdd_height.py: Fix markup by @mkoeppe in #35974
• Move hilbert_numerator test to its proper place by @antonio-rojas in #35977
• Improve getting matrix entries after permutation in _palp_PM_max() by @xuluze in #35997
• New modularized distributions sagemath-{sirocco,bliss,meataxe,mcqd,coxeter3,tdlib} by @mkoeppe in #35661
• Add style guide / reference for # optional - sage.... doctest tags, extend sage -t and sage -fixdoctests for modularization tasks by @mkoeppe in #35749
• Implement basic j-invariants of Drinfeld modules by @DavidAyotte in #35057
• Run pytest for src tree if no filename is given by @kwankyu in #35999
• Partial cython-lint cleanup in mod_sym_num by @fchapoton in #36002
• pkgs/sagemath-meataxe/README.rst: Remove markup unknown to PyPI by @mkoeppe in #36003
• Minor cleanup in binary quadratic forms over ZZ by @fchapoton in #36007
• Regular sequence: closing experimental phase of regular sequence module by @dkrenn in #36011
• pkgs/sagemath*: Exclude all__*.py files of other distributions by @mkoeppe in #36015
• CI Build & Test: Fix test errors involving optional packages coxeter3, ... by @mkoeppe in #36016
• sage -fixdoctests: Handle directory names, call sage -t only once by @mkoeppe in #36024
• sage.graphs: Update # needs, use block-scoped tags by @mkoeppe in #36026
• sage.calculus: Modularization fixes, doctest cosmetics, # needs by @mkoeppe in #35717
• GAP: revise make_gap_list, make_gap_matrix by @fingolfin in #35862
• Avoid messing with the recursion limit by @mezzarobba in #35882
• Regular sequences: implement convolution / ring structure by @dkrenn in #35894
• Note about docker in README.md by @fchapoton in #35958
• Some details in dirichlet.py by @fchapoton in #35959
• Refresh descent_two_isogeny.pyx by @fchapoton in #35979
• Adapt to new Singular sat API by @antonio-rojas in #35980
• Fix evaluation of isogenies on points of infinite order by @JohnCremona in #35984
• Regular sequences: use "positive" partial sums algorithm by @dkrenn in #36001
• Fix accidental damage to classical_geometries.py from 94bca97 by @dimpase in #36017
• Some improvements in sage/graphs/orientations.py by @dcoudert in #35981
• Some care in sage/graphs/domination.py by @dcoudert in #35982
• Use # optional - gap_package_grape etc. instead of # optional - gap_packages by @mkoeppe in #36025
• Fix pycodestyle warning E721 by @jhpalmieri in #36032
• sage.geometry: Update # needs, use block-scoped tags by @mkoeppe in #36033
• Fix block-scoped doctest tags with \ line continuations by @mkoeppe in #36034
• cython-lint : further fixes in quadratic forms by @fchapoton in #36035
• Fix E721 warnings for .pyx files by @jhpalmieri in #36036
• sage.typeset: Update # needs by @mkoeppe in #36037
• sage.plot: Add/update # needs by @mkoeppe in #36038
• cylint: some details in arith, algebras and crypto folders by @fchapoton in #36039
• Fix failing doctest in sage/graphs/bliss.pyx by @dcoudert in #36040
• sage.rings.number_field: Modularization fixes, doctest cosmetics, # needs by @mkoeppe in #36044
• sage.rings.polynomial: Modularization fixes, # needs by @mkoeppe in #36045
• sage.{topology,homology}: Update # needs, modularization fixes by @mkoeppe in #36051
• sage.rings.{padics,valuation}: Modularization fixes, # needs by @mkoeppe in #36052
• sage.rings.finite_rings: Modularization fixes, # needs by @mkoeppe in #36056
• Fix typo in docstring by @JohnCremona in #36062
• Fix link to tutorial in PDF docs. This fixes #35736. by @jhpalmieri in #36066
• Speed-up matrix construction by ensuring MatrixArgs type MA_ENTRIES_ZERO by @vneiger in #36068
• Small cleanup of triangulation/base.pyx by @fchapoton in #36072
• Stop sorting Graph vertices and edges by default by @dcoudert in #36073
• Remove deprecation warnings renaming parameter verbosity to verbose in graphs by @dcoudert in #36074
• Remove rename warning in spanning_tree.pyx by @dcoudert in #36075
• Remove deprecated parameter circular from method is_planar by @dcoudert in #36076
• sage.graphs: fix doctest warnings due to modularization by @dcoudert in #36077
• sage.{modular,schemes}: Modularization fixes for imports; update sage -fiximports, add relint pattern by @mkoeppe in #35884
• Add parameter key to methods multiple_edges and edge_boundary by @dcoudert in #35903
• Add multiple= option to EllipticCurvePoint_field.set_order() by @yyyyx4 in #35935
• Improve method reverse for digraphs by @dcoudert in #35969

New Contributors

• @OP5642 made their first contribution in #35430
• @Bruno-TT made their first contribution in #35009
• @antonmosich made their first contribution in #35641
• @MatheMagicianPi made their first contribution in #35483
• @cyrilbouvier made their first contribution in #35245
• @ed359 made their first contribution in #35773
• @Daniel-Khodabakhsh made their first contribution in #35843
• @deinst made their first contribution in #35812
• @Jun-Hee-Lee made their first contribution in #35852
• @ForrestHilton made their first contribution in #35900
• @xuluze made their first contribution in #35997

Full Changelog: 10.0...10.1