Code

6676 port generative engines#7406

Code

Merged

KumoLiu merged 68 commits intoProject-MONAI:gen-ai-devProject-MONAI/MONAI:gen-ai-devfrom marksgraham:6676_port_generative_enginesmarksgraham/MONAI:6676_port_generative_enginesCopy head branch name to clipboardFeb 1, 2024

+1,155-155

Commits

Commits on Jan 30, 2024

• 5394 enable py311 tests (Project-MONAI#7182)

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  wyli

  authored and

  marksgraham

  committed
  a8c2a1a

• [Auto3DSeg] Add mlflow support in autorunner. (Project-MONAI#7176)

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  dongyang0122

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  marksgraham

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  40aaea3

• 6627 reading dcm folder filtering filenames (Project-MONAI#7181)

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  wyli

  authored and

  marksgraham

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  2971fcd

• Precision issue in get_confusion_matrix (Project-MONAI#7187)

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  2 peopleauthored and

  marksgraham

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  3fc1993

• autorunner params from config (Project-MONAI#7175)

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  myron

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  marksgraham

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  3572fd5

• Implemented VoxelMorph (Project-MONAI#7178)

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  kvttt

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  marksgraham

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  d8b6676

• auto updates (Project-MONAI#7203)

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  monai-bot

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  marksgraham

  committed
  016b386

• fix useless error msg in nnunetv2runner (Project-MONAI#7217)

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  elitap

  authored and

  marksgraham

  committed
  a2c671a

• Fixup mypy 1.7.0 errors (Project-MONAI#7231)

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  Shadow-Devil

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  marksgraham

  committed
  4bad4bc

• add Yun Liu to user list to trigger blossom-ci [skip ci] (Project-MONAI#7239)

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  YanxuanLiu

  authored and

  marksgraham

  committed
  b9b57c8

• Replace single quotation marks with double quotation marks to install… (Project-MONAI#7234)

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  ytl0623

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  marksgraham

  committed
  a22b5dd

• Update bug_report.md (Project-MONAI#7213)

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  2 peopleauthored and

  marksgraham

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  8f781eb

• Add cache option in GridPatchDataset (Project-MONAI#7180)

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  3 peopleauthored and

  marksgraham

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  bf166b5

• 📝 [array] Add examples for EnsureType and CastToType (Project-MONAI#7245)

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  ishandutta0098

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  marksgraham

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• 🔨 [dataset] Handle corrupted cached file in PersistentDataset (Project-MONAI#7244)

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  marksgraham

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  e9673e8

• auto updates (Project-MONAI#7247)

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  monai-bot

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  marksgraham

  committed
  fcb4ff4

• add class label option to write metric report to improve readability … (Project-MONAI#7249)

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  2 peopleauthored and

  marksgraham

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  a99ea95

• Fix B026 unrecommanded star-arg unpacking after a keyword argument (Project-MONAI#7262)

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  KumoLiu

  authored and

  marksgraham

  committed
  ee68d50

• Quote $PY_EXE variable to deal with Python path that contain spaces in Bash (Project-MONAI#7268)

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  ytl0623

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  marksgraham

  committed
  62ad35c

• add SoftclDiceLoss and SoftDiceclDiceLoss loss function in documentation (Project-MONAI#7271)

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  3 peopleauthored and

  marksgraham

  committed
  9ced3e5

• Skip Old Pytorch Versions for SwinUNETR (Project-MONAI#7266)

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  KumoLiu

  authored and

  marksgraham

  committed
  8642877

• Bump conda-incubator/setup-miniconda from 2 to 3 (Project-MONAI#7274)

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  dependabot[bot]

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  marksgraham

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  708167a

• 6676 port generative networks autoencoderkl (Project-MONAI#7260)

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  3 peoplecommitted
  039ee21

• 6676 port generative networks vqvae (Project-MONAI#7285)

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  3 peoplecommitted
  20a57e7

• 6676 port generative networks transformer (Project-MONAI#7300)

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  marksgraham

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  5e2466d

• 6676 port generative networks ddpm (Project-MONAI#7304)

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  marksgraham

  and

  KumoLiu

  committed
  249c39a

• 6676 port generative networks controlnet (Project-MONAI#7312)

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  marksgraham

  committed
  c9f028e

• Adds patchgan discriminator (Project-MONAI#7319)

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  marksgraham

  and

  KumoLiu

  committed
  58b4575

• 6676 port generative networks spade (Project-MONAI#7320)

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  3 peoplecommitted
  aef4daf

• Adds adversarial trainer

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  marksgraham

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  2fe972f

• Updates docs

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  marksgraham

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  33dce3a

• Adds preparebatch

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  marksgraham

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  023b6bb

• Outline test, need schedulers and inferer implemented to finish

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  marksgraham

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  a017b8b

• 6676 port diffusion schedulers (Project-MONAI#7332)

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  marksgraham

  committed
  64735eb

• 6676 port diffusion schedulers (Project-MONAI#7364)

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  marksgraham

  and

  pre-commit-ci[bot]

  committed
  2a8104d

• Adds ordering util (Project-MONAI#7369)

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  marksgraham

  committed
  cc17f72

• 6676 port generative inferers (Project-MONAI#7379)

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  marksgraham

  and

  KumoLiu

  committed
  f377f2e

• Adds prepare batch engine

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  marksgraham

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  bc69d8b

• Test prepare batch

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  marksgraham

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  2a8954b

• Skip nibabel test if not installed

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  marksgraham

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  e15a50f

• Adds prepare batch to min tests

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  marksgraham

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  f60c4e2

• update the Python version requirements for transformers (Project-MONAI#7275)

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  KumoLiu

  authored and

  marksgraham

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  11c1285

• 7263 add diffusion loss (Project-MONAI#7272)

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  2 peopleauthored and

  marksgraham

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  e15b570

• [Attention block] relative positional embedding (Project-MONAI#7346)

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  4 peopleauthored and

  marksgraham

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  fdbc611

• Fix swinunetrv2 2D bug (Project-MONAI#7302)

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  heyufan1995

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  marksgraham

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  f87339e

• Fix RuntimeError in DataAnalyzer (Project-MONAI#7310)

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  KumoLiu

  authored and

  marksgraham

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  9c07cb8

• Support specified filenames in Saveimage (Project-MONAI#7318)

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  KumoLiu

  authored and

  marksgraham

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  7eb1a7d

• Fix typo (Project-MONAI#7321)

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  KumoLiu

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  marksgraham

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  426cec9

• fix optimizer pararmeter issue (Project-MONAI#7322)

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  binliunls

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  marksgraham

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  4e2160c

• Fix lazy ignored in SpatialPadd (Project-MONAI#7316)

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  2 peopleauthored and

  marksgraham

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  0e89c92

• Update openslide-python version (Project-MONAI#7344)

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  KumoLiu

  authored and

  marksgraham

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  0a03228

• Upgrade the version of transformers (Project-MONAI#7343)

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  KumoLiu

  authored and

  marksgraham

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• Bump github/codeql-action from 2 to 3 (Project-MONAI#7354)

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  dependabot[bot]

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  marksgraham

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• Bump actions/upload-artifact from 3 to 4 (Project-MONAI#7350)

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  dependabot[bot]

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  marksgraham

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• Bump actions/setup-python from 4 to 5 (Project-MONAI#7351)

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  dependabot[bot]

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  marksgraham

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• Bump actions/download-artifact from 3 to 4 (Project-MONAI#7352)

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  dependabot[bot]

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• Bump peter-evans/slash-command-dispatch from 3.0.1 to 3.0.2 (Project-MONAI#7353)

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  dependabot[bot]

  authored and

  marksgraham

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• Give more useful exception when batch is considered during matrix multiplication (Project-MONAI#7326)

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  2 peopleauthored and

  marksgraham

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  5ce1b60

• Fix incorrectly size compute in auto3dseg analyzer (Project-MONAI#7374)

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  KumoLiu

  authored and

  marksgraham

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• 7380 mention demo in bending energy and diffusion docstrings (Project-MONAI#7381)

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  kvttt

  authored and

  marksgraham

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• Pin gdown version to v4.6.3 (Project-MONAI#7384)

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  KumoLiu

  authored and

  marksgraham

  committed
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• Track applied operations in image filter (Project-MONAI#7395)

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  vlaminckaxel

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• Add compile support in SupervisedTrainer and SupervisedEvaluator (Project-MONAI#7375)

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  3 peopleauthored and

  marksgraham

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• Fix CUDA_VISIBLE_DEVICES setting ignored (Project-MONAI#7408)

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  marksgraham

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• Fix Incorrect updated affine in NrrdReader and update docstring in ITKReader (Project-MONAI#7415)

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  KumoLiu

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  marksgraham

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• Ignore E704 after update black (Project-MONAI#7422)

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  KumoLiu

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• new formatting

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  marksgraham

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• Merge branch 'gen-ai-dev' into 6676_port_generative_engines

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  marksgraham

  authored
  b01b372