6676 port generative engines #7406
Merged
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
KumoLiu
reviewed
Jan 22, 2024
11 tasks
Fixes Project-MONAI#5394 ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: Wenqi Li <wenqil@nvidia.com> Signed-off-by: Mark Graham <markgraham539@gmail.com>
Add MLflow support in AutoRunner Class. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: dongy <dongy@nvidia.com> Signed-off-by: Mark Graham <markgraham539@gmail.com>
Fixes Project-MONAI#6627 ### Description adding a `fname_regex` option to the pydicom reader ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [x] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [x] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: Wenqi Li <wenqil@nvidia.com> Signed-off-by: Mark Graham <markgraham539@gmail.com>
Fixes Project-MONAI#7186 ### Description remove unnecessary float() ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: KumoLiu <yunl@nvidia.com> Co-authored-by: Wenqi Li <831580+wyli@users.noreply.github.com> Signed-off-by: Mark Graham <markgraham539@gmail.com>
allows setting AutoRunner params from config allows specifying number of folds in config --------- Signed-off-by: myron <amyronenko@nvidia.com> Signed-off-by: Mark Graham <markgraham539@gmail.com>
Fixes Project-MONAI#5484. ### Description Implemented VoxelMorph and added some docstrings. Checked coding style locally. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [x] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [x] In-line docstrings updated. - [x] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: kaibo <ktang@unc.edu> Signed-off-by: Mark Graham <markgraham539@gmail.com>
Signed-off-by: monai-bot <monai.miccai2019@gmail.com> Signed-off-by: monai-bot <monai.miccai2019@gmail.com> Signed-off-by: Mark Graham <markgraham539@gmail.com>
Fixes # fix useless error msg in nnunetv2runner ### Description ### Types of changes - [x] Non-breaking change (fix or new feature that would not break existing functionality). Signed-off-by: elitap <elias.tappeiner@gmx.at> Signed-off-by: Mark Graham <markgraham539@gmail.com>
Fixes Project-MONAI#7230. ### Description Fix the typing issues and the deprecation. Also always run type checking with Linux environment, since ForkServerContext is not available on Windows. ### Types of changes - [x] Non-breaking change (fix or new feature that would not break existing functionality). --------- Signed-off-by: Felix Schnabel <f.schnabel@tum.de> Signed-off-by: Mark Graham <markgraham539@gmail.com>
…AI#7239) Fixes # . ### Description A few sentences describing the changes proposed in this pull request. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. Add new developer to blossom-ci trigger list Signed-off-by: YanxuanLiu <yanxuanl@nvidia.com> Signed-off-by: Mark Graham <markgraham539@gmail.com>
Project-MONAI#7234) … MONAI with all dependencies on Windows Fixes Project-MONAI#6118 ### Description The Windows shell doesn't recognize single quotes to delimit a string at all, so on Windows you'll need to use double quotes. It's the same command no matter which type of quotes you use; after the shell does its processing, the argument is passed to pip with the quotation marks already removed. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. Signed-off-by: ytl0623 <david89062388@gmail.com> Signed-off-by: Mark Graham <markgraham539@gmail.com>
Avoid syntax error on Windows
### Description
```log
(.venv) C:\Dev\Kitware\python>python -c 'import monai; monai.config.print_debug_info()'
File "<string>", line 1
'import
^
SyntaxError: unterminated string literal (detected at line 1)
```
### Types of changes
<!--- Put an `x` in all the boxes that apply, and remove the not
applicable items -->
- [x] Non-breaking change (fix or new feature that would not break
existing functionality).
- [ ] Breaking change (fix or new feature that would cause existing
functionality to change).
- [ ] New tests added to cover the changes.
- [ ] Integration tests passed locally by running `./runtests.sh -f -u
--net --coverage`.
- [ ] Quick tests passed locally by running `./runtests.sh --quick
--unittests --disttests`.
- [ ] In-line docstrings updated.
- [ ] Documentation updated, tested `make html` command in the `docs/`
folder.
Signed-off-by: Dženan Zukić <dzenan.zukic@kitware.com>
Co-authored-by: Eric Kerfoot <17726042+ericspod@users.noreply.github.com>
Signed-off-by: Mark Graham <markgraham539@gmail.com>
Part of Project-MONAI#6904 ### Description - Fix inefficient patching in `PatchDataset` - Add cache option in `GridPatchDataset` ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: KumoLiu <yunl@nvidia.com> Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com> Co-authored-by: Eric Kerfoot <17726042+ericspod@users.noreply.github.com> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Signed-off-by: Mark Graham <markgraham539@gmail.com>
) Fixes Project-MONAI#7101 ### Description Added examples in the docstrings for `EnsureType` and `CastToType` transforms which show how they function under different circumstances. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [x] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [x] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. Signed-off-by: Ishan Dutta <ishandutta0098@gmail.com> Signed-off-by: Mark Graham <markgraham539@gmail.com>
…t-MONAI#7244) Fixes Project-MONAI#5723 ### Description Corrupted cached files in the PersistentDataset cause the exception: `RuntimeError: Invalid magic number; corrupt file?` With this PR we handle that case in the try-except block and continue the usual functionality if the cached file was absent. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [x] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [x] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: Ishan Dutta <ishandutta0098@gmail.com> Co-authored-by: YunLiu <55491388+KumoLiu@users.noreply.github.com> Signed-off-by: Mark Graham <markgraham539@gmail.com>
Signed-off-by: monai-bot <monai.miccai2019@gmail.com> Signed-off-by: monai-bot <monai.miccai2019@gmail.com> Signed-off-by: Mark Graham <markgraham539@gmail.com>
Project-MONAI#7249) add class label option to write metric report to improve readability, without that option in case of many classes the resulting report is very hard to interpret. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). --------- Signed-off-by: elitap <elias.tappeiner@gmx.at> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Signed-off-by: Mark Graham <markgraham539@gmail.com>
…roject-MONAI#7262) Fixes Project-MONAI#7261 ### Description Remove star-arg unpacking before a keyword argument. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. Signed-off-by: KumoLiu <yunl@nvidia.com> Signed-off-by: Mark Graham <markgraham539@gmail.com>
…n Bash (Project-MONAI#7268) Fixes Project-MONAI#5857. ### Description When dealing with paths that contain spaces in Bash, it's important to properly quote the variables to ensure that spaces are handled correctly. So, maybe we can replace all `$PY_EXE` variables to `"$PY_EXE"` in the `runtests.sh` file. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. Signed-off-by: ytl0623 <david89062388@gmail.com> Signed-off-by: Mark Graham <markgraham539@gmail.com>
…ion (Project-MONAI#7271) Fixes Project-MONAI#7193 ### Description add SoftclDiceLoss and SoftDiceclDiceLoss loss function in documentation(https://github.com/Project-MONAI/MONAI/blob/dev/docs/source/losses.rst?plain=1) ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: ytl0623 <david89062388@gmail.com> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: YunLiu <55491388+KumoLiu@users.noreply.github.com> Signed-off-by: Mark Graham <markgraham539@gmail.com>
Fixes Project-MONAI#7265. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: KumoLiu <yunl@nvidia.com> Signed-off-by: Mark Graham <markgraham539@gmail.com>
Bumps [conda-incubator/setup-miniconda](https://github.com/conda-incubator/setup-miniconda) from 2 to 3. <details> <summary>Release notes</summary> <p><em>Sourced from <a href="https://github.com/conda-incubator/setup-miniconda/releases">conda-incubator/setup-miniconda's releases</a>.</em></p> <blockquote> <h2>Version 3.0.0</h2> <h3>Features</h3> <ul> <li><a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/308">#308</a> Update to node20</li> <li><a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/291">#291</a> Add conda-solver option (defaults to libmamba)</li> </ul> <h3>Fixes</h3> <ul> <li><a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/299">#299</a> Fix condaBasePath when useBundled is false, and there's no pre-existing conda</li> </ul> <h3>Documentation</h3> <ul> <li><a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/309">#309</a> Switch to main branch based development</li> <li><a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/313">#313</a> Specify team conda-incubator/setup-miniconda as codeowners</li> <li><a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/318">#318</a> README: update actions in examples, add security section, similar actions</li> </ul> <h3>Tasks and Maintenance</h3> <ul> <li><a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/307">#307</a> Run dependabot against main branch and also update node packages</li> <li><a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/311">#311</a> Bump actions/checkout from 2 to 4</li> <li><a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/310">#310</a> Bump actions/cache from 1 to 3</li> <li><a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/314">#314</a> Strip/update dependencies</li> <li><a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/315">#315</a> Split lint into check and build, switch from <code>npm install</code> to <code>npm ci</code></li> <li><a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/317">#317</a> Bump normalize-url from 4.5.1 to 8.0.0</li> <li><a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/316">#316</a> Faster workflow response / saving resources via timeout/concurrency policy</li> </ul> <p><a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/308">#308</a>: <a href="https://redirect.github.com/conda-incubator/setup-miniconda/pull/308">conda-incubator/setup-miniconda#308</a> <a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/291">#291</a>: <a href="https://redirect.github.com/conda-incubator/setup-miniconda/pull/291">conda-incubator/setup-miniconda#291</a> <a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/299">#299</a>: <a href="https://redirect.github.com/conda-incubator/setup-miniconda/pull/299">conda-incubator/setup-miniconda#299</a> <a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/309">#309</a>: <a href="https://redirect.github.com/conda-incubator/setup-miniconda/pull/309">conda-incubator/setup-miniconda#309</a> <a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/313">#313</a>: <a href="https://redirect.github.com/conda-incubator/setup-miniconda/pull/313">conda-incubator/setup-miniconda#313</a> <a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/318">#318</a>: <a href="https://redirect.github.com/conda-incubator/setup-miniconda/pull/318">conda-incubator/setup-miniconda#318</a> <a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/307">#307</a>: <a href="https://redirect.github.com/conda-incubator/setup-miniconda/pull/307">conda-incubator/setup-miniconda#307</a> <a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/311">#311</a>: <a href="https://redirect.github.com/conda-incubator/setup-miniconda/pull/311">conda-incubator/setup-miniconda#311</a> <a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/310">#310</a>: <a href="https://redirect.github.com/conda-incubator/setup-miniconda/pull/310">conda-incubator/setup-miniconda#310</a> <a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/314">#314</a>: <a href="https://redirect.github.com/conda-incubator/setup-miniconda/pull/314">conda-incubator/setup-miniconda#314</a> <a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/315">#315</a>: <a href="https://redirect.github.com/conda-incubator/setup-miniconda/pull/315">conda-incubator/setup-miniconda#315</a> <a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/317">#317</a>: <a href="https://redirect.github.com/conda-incubator/setup-miniconda/pull/317">conda-incubator/setup-miniconda#317</a> <a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/316">#316</a>: <a href="https://redirect.github.com/conda-incubator/setup-miniconda/pull/316">conda-incubator/setup-miniconda#316</a></p> <h2>New Contributors</h2> <ul> <li><a href="https://github.com/isuruf"><code>@isuruf</code></a> made their first contribution in <a href="https://redirect.github.com/conda-incubator/setup-miniconda/pull/299">conda-incubator/setup-miniconda#299</a></li> </ul> <p><strong>Full Changelog</strong>: <a href="https://github.com/conda-incubator/setup-miniconda/compare/v2...v3.0.0">https://github.com/conda-incubator/setup-miniconda/compare/v2...v3.0.0</a></p> <h2>Version 2.3.0</h2> <h3>Documentation</h3> <ul> <li><a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/263">#263</a> Update links to GitHub shell docs</li> </ul> <!-- raw HTML omitted --> </blockquote> <p>... (truncated)</p> </details> <details> <summary>Changelog</summary> <p><em>Sourced from <a href="https://github.com/conda-incubator/setup-miniconda/blob/main/CHANGELOG.md">conda-incubator/setup-miniconda's changelog</a>.</em></p> <blockquote> <h2><a href="https://github.com/conda-incubator/setup-miniconda/releases/tag/v3.0.1">v3.0.1</a> (2023-11-29)</h2> <h3>Fixes</h3> <ul> <li><a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/325">#325</a> Fix environment activation on windows (a v3 regression) due to hard-coded install PATH</li> </ul> <p><a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/325">#325</a>: <a href="https://redirect.github.com/conda-incubator/setup-miniconda/pull/325">conda-incubator/setup-miniconda#325</a></p> <h2><a href="https://github.com/conda-incubator/setup-miniconda/releases/tag/v3.0.0">v3.0.0</a> (2023-11-27)</h2> <h3>Features</h3> <ul> <li><a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/308">#308</a> Update to node20</li> <li><a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/291">#291</a> Add conda-solver option (defaults to libmamba)</li> </ul> <h3>Fixes</h3> <ul> <li><a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/299">#299</a> Fix condaBasePath when useBundled is false, and there's no pre-existing conda</li> </ul> <h3>Documentation</h3> <ul> <li><a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/309">#309</a> Switch to main branch based development</li> <li><a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/313">#313</a> Specify team conda-incubator/setup-miniconda as codeowners</li> <li><a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/318">#318</a> README: update actions in examples, add security section, similar actions</li> </ul> <h3>Tasks and Maintenance</h3> <ul> <li><a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/307">#307</a> Run dependabot against main branch and also update node packages</li> <li><a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/311">#311</a> Bump actions/checkout from 2 to 4</li> <li><a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/310">#310</a> Bump actions/cache from 1 to 3</li> <li><a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/314">#314</a> Strip/update dependencies</li> <li><a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/315">#315</a> Split lint into check and build, switch from <code>npm install</code> to <code>npm ci</code></li> <li><a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/317">#317</a> Bump normalize-url from 4.5.1 to 8.0.0</li> <li><a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/316">#316</a> Faster workflow response / saving resources via timeout/concurrency policy</li> </ul> <p><a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/308">#308</a>: <a href="https://redirect.github.com/conda-incubator/setup-miniconda/pull/308">conda-incubator/setup-miniconda#308</a> <a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/291">#291</a>: <a href="https://redirect.github.com/conda-incubator/setup-miniconda/pull/291">conda-incubator/setup-miniconda#291</a> <a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/299">#299</a>: <a href="https://redirect.github.com/conda-incubator/setup-miniconda/pull/299">conda-incubator/setup-miniconda#299</a> <a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/309">#309</a>: <a href="https://redirect.github.com/conda-incubator/setup-miniconda/pull/309">conda-incubator/setup-miniconda#309</a> <a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/313">#313</a>: <a href="https://redirect.github.com/conda-incubator/setup-miniconda/pull/313">conda-incubator/setup-miniconda#313</a> <a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/318">#318</a>: <a href="https://redirect.github.com/conda-incubator/setup-miniconda/pull/318">conda-incubator/setup-miniconda#318</a> <a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/307">#307</a>: <a href="https://redirect.github.com/conda-incubator/setup-miniconda/pull/307">conda-incubator/setup-miniconda#307</a> <a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/311">#311</a>: <a href="https://redirect.github.com/conda-incubator/setup-miniconda/pull/311">conda-incubator/setup-miniconda#311</a> <a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/310">#310</a>: <a href="https://redirect.github.com/conda-incubator/setup-miniconda/pull/310">conda-incubator/setup-miniconda#310</a></p> <!-- raw HTML omitted --> </blockquote> <p>... (truncated)</p> </details> <details> <summary>Commits</summary> <ul> <li><a href="https://github.com/conda-incubator/setup-miniconda/commit/11b562958363ec5770fef326fe8ef0366f8cbf8a"><code>11b5629</code></a> Prepare 3.0.1 (<a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/326">#326</a>)</li> <li><a href="https://github.com/conda-incubator/setup-miniconda/commit/8706aa744e0162a2264dc938c759d2b51f9b5e10"><code>8706aa7</code></a> Fix env activation on win (a v3 regression) due to hard-coded install PATH (#...</li> <li><a href="https://github.com/conda-incubator/setup-miniconda/commit/c585a970973750f68d4d5c75284051b3f0167afe"><code>c585a97</code></a> Bump conda-incubator/setup-miniconda from 2.3.0 to 3.0.0 (<a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/321">#321</a>)</li> <li><a href="https://github.com/conda-incubator/setup-miniconda/commit/2defc80cc6f4028b1780c50faf08dd505d698976"><code>2defc80</code></a> Prepare release (<a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/320">#320</a>)</li> <li><a href="https://github.com/conda-incubator/setup-miniconda/commit/0d5a56b9eb002ebca917fd24dbbb168694a769e3"><code>0d5a56b</code></a> Bump actions/checkout from 2 to 4 (<a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/319">#319</a>)</li> <li><a href="https://github.com/conda-incubator/setup-miniconda/commit/45fd3f90899ca98b9fe9ed48921c9edbb341a570"><code>45fd3f9</code></a> Merge pull request <a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/316">#316</a> from dbast/timeout</li> <li><a href="https://github.com/conda-incubator/setup-miniconda/commit/d1e04fc2677b38349d15832651d5d3c485c8411a"><code>d1e04fc</code></a> Merge pull request <a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/299">#299</a> from isuruf/condaBasePath</li> <li><a href="https://github.com/conda-incubator/setup-miniconda/commit/fab00738406b3d3854b3b57791e274f16ac95ab4"><code>fab0073</code></a> Merge pull request <a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/318">#318</a> from dbast/readme</li> <li><a href="https://github.com/conda-incubator/setup-miniconda/commit/fa6bdf964307f648fedc0f07787e550f08eb2812"><code>fa6bdf9</code></a> Update with npm run build</li> <li><a href="https://github.com/conda-incubator/setup-miniconda/commit/d42f8b884a951a7e5af53888bd6101e0fd1dc916"><code>d42f8b8</code></a> Fix condaBasePath when useBundled is false, and there's no pre-existing conda</li> <li>Additional commits viewable in <a href="https://github.com/conda-incubator/setup-miniconda/compare/v2...v3">compare view</a></li> </ul> </details> <br /> [](https://docs.github.com/en/github/managing-security-vulnerabilities/about-dependabot-security-updates#about-compatibility-scores) Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting `@dependabot rebase`. [//]: # (dependabot-automerge-start) [//]: # (dependabot-automerge-end) --- <details> <summary>Dependabot commands and options</summary> <br /> You can trigger Dependabot actions by commenting on this PR: - `@dependabot rebase` will rebase this PR - `@dependabot recreate` will recreate this PR, overwriting any edits that have been made to it - `@dependabot merge` will merge this PR after your CI passes on it - `@dependabot squash and merge` will squash and merge this PR after your CI passes on it - `@dependabot cancel merge` will cancel a previously requested merge and block automerging - `@dependabot reopen` will reopen this PR if it is closed - `@dependabot close` will close this PR and stop Dependabot recreating it. You can achieve the same result by closing it manually - `@dependabot show <dependency name> ignore conditions` will show all of the ignore conditions of the specified dependency - `@dependabot ignore this major version` will close this PR and stop Dependabot creating any more for this major version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this minor version` will close this PR and stop Dependabot creating any more for this minor version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this dependency` will close this PR and stop Dependabot creating any more for this dependency (unless you reopen the PR or upgrade to it yourself) </details> Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Signed-off-by: Mark Graham <markgraham539@gmail.com>
Partially fixes Project-MONAI#6676 ### Description Implements the AutoencoderKL network from MONAI Generative. NB this network is subject to a planned refactor once the porting is complete, [see here](Project-MONAI#7227). ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [x] New tests added to cover the changes. - [x] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [x] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [x] In-line docstrings updated. - [x] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: Mark Graham <markgraham539@gmail.com> Co-authored-by: Eric Kerfoot <17726042+ericspod@users.noreply.github.com> Co-authored-by: YunLiu <55491388+KumoLiu@users.noreply.github.com> Signed-off-by: Mark Graham <markgraham539@gmail.com>
Partially fixes Project-MONAI#6676 ### Description Implements the VQ-VAE network, including the vector quantizer block, from MONAI Generative. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [x] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [x] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: KumoLiu <yunl@nvidia.com> Signed-off-by: Mark Graham <markgraham539@gmail.com> Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com> Co-authored-by: YunLiu <55491388+KumoLiu@users.noreply.github.com> Co-authored-by: KumoLiu <yunl@nvidia.com> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Signed-off-by: Mark Graham <markgraham539@gmail.com>
Towards Project-MONAI#6676 . ### Description Adds a simple decoder-only transformer architecture. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [x] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [x] In-line docstrings updated. - [x] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: Mark Graham <markgraham539@gmail.com>
Towards Project-MONAI#6676 . ### Description Adds a DDPM unet. Refactoring for some of the blocks here is scheduled [here](Project-MONAI#7227). ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [x] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [x] In-line docstrings updated. - [x] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: Mark Graham <markgraham539@gmail.com> Co-authored-by: YunLiu <55491388+KumoLiu@users.noreply.github.com> Signed-off-by: Mark Graham <markgraham539@gmail.com>
Part of Project-MONAI#6676 . ### Description Ports the ControlNet. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [x] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [x] In-line docstrings updated. - [x] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: Mark Graham <markgraham539@gmail.com>
Part of Project-MONAI#6676 . ### Description Adds a patchgan-style discriminator, both single scale and multiscale. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [x] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [x] In-line docstrings updated. - [x] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: Mark Graham <markgraham539@gmail.com> Co-authored-by: YunLiu <55491388+KumoLiu@users.noreply.github.com> Signed-off-by: Mark Graham <markgraham539@gmail.com>
Fixes Project-MONAI#7317 ### Description Add support specified filename for users to save like nibabel.save. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com> Signed-off-by: Mark Graham <markgraham539@gmail.com>
Fix typo. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com> Signed-off-by: Mark Graham <markgraham539@gmail.com>
Fixes # . ### Description A few sentences describing the changes proposed in this pull request. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. Signed-off-by: binliu <binliu@nvidia.com> Signed-off-by: Mark Graham <markgraham539@gmail.com>
Fixes Project-MONAI#7314 Project-MONAI#7315. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com> Co-authored-by: Ben Murray <ben.murray@gmail.com> Signed-off-by: Mark Graham <markgraham539@gmail.com>
Signed-off-by: Mark Graham <markgraham539@gmail.com>
Fixes Project-MONAI#7338 ### Description transformers' version is pinned to v4.22 since Project-MONAI#5157. Updated the version refer to huggingface/transformers#21678. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com> Signed-off-by: Mark Graham <markgraham539@gmail.com>
Bumps [github/codeql-action](https://github.com/github/codeql-action) from 2 to 3. <details> <summary>Release notes</summary> <p><em>Sourced from <a href="https://github.com/github/codeql-action/releases">github/codeql-action's releases</a>.</em></p> <blockquote> <h2>CodeQL Bundle v2.15.5</h2> <p>Bundles CodeQL CLI v2.15.5</p> <ul> <li>(<a href="https://github.com/github/codeql-cli-binaries/blob/HEAD/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql-cli-binaries/releases/tag/v2.15.5">release</a>)</li> </ul> <p>Includes the following CodeQL language packs from <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5"><code>github/codeql@codeql-cli/v2.15.5</code></a>:</p> <ul> <li><code>codeql/cpp-queries</code> (<a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/cpp/ql/src/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/cpp/ql/src">source</a>)</li> <li><code>codeql/cpp-all</code> (<a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/cpp/ql/lib/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/cpp/ql/lib">source</a>)</li> <li><code>codeql/csharp-queries</code> (<a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/csharp/ql/src/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/csharp/ql/src">source</a>)</li> <li><code>codeql/csharp-all</code> (<a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/csharp/ql/lib/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/csharp/ql/lib">source</a>)</li> <li><code>codeql/go-queries</code> (<a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/go/ql/src/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/go/ql/src">source</a>)</li> <li><code>codeql/go-all</code> (<a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/go/ql/lib/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/go/ql/lib">source</a>)</li> <li><code>codeql/java-queries</code> (<a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/java/ql/src/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/java/ql/src">source</a>)</li> <li><code>codeql/java-all</code> (<a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/java/ql/lib/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/java/ql/lib">source</a>)</li> <li><code>codeql/javascript-queries</code> (<a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/javascript/ql/src/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/javascript/ql/src">source</a>)</li> <li><code>codeql/javascript-all</code> (<a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/javascript/ql/lib/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/javascript/ql/lib">source</a>)</li> <li><code>codeql/python-queries</code> (<a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/python/ql/src/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/python/ql/src">source</a>)</li> <li><code>codeql/python-all</code> (<a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/python/ql/lib/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/python/ql/lib">source</a>)</li> <li><code>codeql/ruby-queries</code> (<a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/ruby/ql/src/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/ruby/ql/src">source</a>)</li> <li><code>codeql/ruby-all</code> (<a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/ruby/ql/lib/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/ruby/ql/lib">source</a>)</li> <li><code>codeql/swift-queries</code> (<a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/swift/ql/src/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/swift/ql/src">source</a>)</li> <li><code>codeql/swift-all</code> (<a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/swift/ql/lib/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/swift/ql/lib">source</a>)</li> </ul> <h2>CodeQL Bundle v2.15.4</h2> <p>Bundles CodeQL CLI v2.15.4</p> <ul> <li>(<a href="https://github.com/github/codeql-cli-binaries/blob/HEAD/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql-cli-binaries/releases/tag/v2.15.4">release</a>)</li> </ul> <p>Includes the following CodeQL language packs from <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.4"><code>github/codeql@codeql-cli/v2.15.4</code></a>:</p> <ul> <li><code>codeql/cpp-queries</code> (<a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.4/cpp/ql/src/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.4/cpp/ql/src">source</a>)</li> <li><code>codeql/cpp-all</code> (<a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.4/cpp/ql/lib/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.4/cpp/ql/lib">source</a>)</li> <li><code>codeql/csharp-queries</code> (<a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.4/csharp/ql/src/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.4/csharp/ql/src">source</a>)</li> <li><code>codeql/csharp-all</code> (<a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.4/csharp/ql/lib/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.4/csharp/ql/lib">source</a>)</li> <li><code>codeql/go-queries</code> (<a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.4/go/ql/src/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.4/go/ql/src">source</a>)</li> <li><code>codeql/go-all</code> (<a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.4/go/ql/lib/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.4/go/ql/lib">source</a>)</li> <li><code>codeql/java-queries</code> (<a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.4/java/ql/src/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.4/java/ql/src">source</a>)</li> <li><code>codeql/java-all</code> (<a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.4/java/ql/lib/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.4/java/ql/lib">source</a>)</li> <li><code>codeql/javascript-queries</code> (<a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.4/javascript/ql/src/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.4/javascript/ql/src">source</a>)</li> <li><code>codeql/javascript-all</code> (<a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.4/javascript/ql/lib/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.4/javascript/ql/lib">source</a>)</li> <li><code>codeql/python-queries</code> (<a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.4/python/ql/src/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.4/python/ql/src">source</a>)</li> <li><code>codeql/python-all</code> (<a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.4/python/ql/lib/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.4/python/ql/lib">source</a>)</li> <li><code>codeql/ruby-queries</code> (<a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.4/ruby/ql/src/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.4/ruby/ql/src">source</a>)</li> <li><code>codeql/ruby-all</code> (<a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.4/ruby/ql/lib/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.4/ruby/ql/lib">source</a>)</li> <li><code>codeql/swift-queries</code> (<a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.4/swift/ql/src/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.4/swift/ql/src">source</a>)</li> <li><code>codeql/swift-all</code> (<a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.4/swift/ql/lib/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.4/swift/ql/lib">source</a>)</li> </ul> <h2>CodeQL Bundle</h2> <p>Bundles CodeQL CLI v2.15.3</p> <ul> <li>(<a href="https://github.com/github/codeql-cli-binaries/blob/HEAD/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql-cli-binaries/releases/tag/v2.15.3">release</a>)</li> </ul> <p>Includes the following CodeQL language packs from <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.3"><code>github/codeql@codeql-cli/v2.15.3</code></a>:</p> <ul> <li><code>codeql/cpp-queries</code> (<a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.3/cpp/ql/src/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.3/cpp/ql/src">source</a>)</li> </ul> <!-- raw HTML omitted --> </blockquote> <p>... (truncated)</p> </details> <details> <summary>Changelog</summary> <p><em>Sourced from <a href="https://github.com/github/codeql-action/blob/main/CHANGELOG.md">github/codeql-action's changelog</a>.</em></p> </details> <details> <summary>Commits</summary> <ul> <li><a href="https://github.com/github/codeql-action/commit/e0c2b0a8a0cf7360f5f17b1ee83b98565e81cbaf"><code>e0c2b0a</code></a> change version numbers inside processing function as well</li> <li><a href="https://github.com/github/codeql-action/commit/8e4a6c7a903526fda317aa47e226cbd5a4f1d358"><code>8e4a6c7</code></a> improve handling of changelog processing for backports</li> <li><a href="https://github.com/github/codeql-action/commit/511f073971a2ce589ceea100a90831c5ca4310bb"><code>511f073</code></a> Merge pull request <a href="https://redirect.github.com/github/codeql-action/issues/2033">#2033</a> from github/dependabot/npm_and_yarn/npm-0a98872b3d</li> <li><a href="https://github.com/github/codeql-action/commit/ebf5a837135e243d2654e281549af1ee7dc107aa"><code>ebf5a83</code></a> Merge pull request <a href="https://redirect.github.com/github/codeql-action/issues/2035">#2035</a> from github/mergeback/v3.22.11-to-main-b374143c</li> <li><a href="https://github.com/github/codeql-action/commit/7813bda958fdd91160a45ff6cdb3a723b381c8c6"><code>7813bda</code></a> Update checked-in dependencies</li> <li><a href="https://github.com/github/codeql-action/commit/2b2fb6b1dc9a83da2dd429ce0c83af9380973083"><code>2b2fb6b</code></a> Update changelog and version after v3.22.11</li> <li><a href="https://github.com/github/codeql-action/commit/b374143c1149a9115d881581d29b8390bbcbb59c"><code>b374143</code></a> Merge pull request <a href="https://redirect.github.com/github/codeql-action/issues/2034">#2034</a> from github/update-v3.22.11-64e61baea</li> <li><a href="https://github.com/github/codeql-action/commit/95591babe868195080e3ca2c641042066f097f3d"><code>95591ba</code></a> Merge branch 'main' into dependabot/npm_and_yarn/npm-0a98872b3d</li> <li><a href="https://github.com/github/codeql-action/commit/e2b5cc75ce46a4a33dbafa57e19019d6bd5a67be"><code>e2b5cc7</code></a> Update changelog for v3.22.11</li> <li>See full diff in <a href="https://github.com/github/codeql-action/compare/v2...v3">compare view</a></li> </ul> </details> <br /> [](https://docs.github.com/en/github/managing-security-vulnerabilities/about-dependabot-security-updates#about-compatibility-scores) Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting `@dependabot rebase`. [//]: # (dependabot-automerge-start) [//]: # (dependabot-automerge-end) --- <details> <summary>Dependabot commands and options</summary> <br /> You can trigger Dependabot actions by commenting on this PR: - `@dependabot rebase` will rebase this PR - `@dependabot recreate` will recreate this PR, overwriting any edits that have been made to it - `@dependabot merge` will merge this PR after your CI passes on it - `@dependabot squash and merge` will squash and merge this PR after your CI passes on it - `@dependabot cancel merge` will cancel a previously requested merge and block automerging - `@dependabot reopen` will reopen this PR if it is closed - `@dependabot close` will close this PR and stop Dependabot recreating it. You can achieve the same result by closing it manually - `@dependabot show <dependency name> ignore conditions` will show all of the ignore conditions of the specified dependency - `@dependabot ignore this major version` will close this PR and stop Dependabot creating any more for this major version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this minor version` will close this PR and stop Dependabot creating any more for this minor version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this dependency` will close this PR and stop Dependabot creating any more for this dependency (unless you reopen the PR or upgrade to it yourself) </details> Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Signed-off-by: Mark Graham <markgraham539@gmail.com>
Bumps [actions/upload-artifact](https://github.com/actions/upload-artifact) from 3 to 4. <details> <summary>Release notes</summary> <p><em>Sourced from <a href="https://github.com/actions/upload-artifact/releases">actions/upload-artifact's releases</a>.</em></p> <blockquote> <h2>v4.0.0</h2> <h2>What's Changed</h2> <p>The release of upload-artifact@v4 and download-artifact@v4 are major changes to the backend architecture of Artifacts. They have numerous performance and behavioral improvements.</p> <p>For more information, see the <a href="https://github.com/actions/toolkit/tree/main/packages/artifact"><code>@actions/artifact</code></a> documentation.</p> <h2>New Contributors</h2> <ul> <li><a href="https://github.com/vmjoseph"><code>@vmjoseph</code></a> made their first contribution in <a href="https://redirect.github.com/actions/upload-artifact/pull/464">actions/upload-artifact#464</a></li> </ul> <p><strong>Full Changelog</strong>: <a href="https://github.com/actions/upload-artifact/compare/v3...v4.0.0">https://github.com/actions/upload-artifact/compare/v3...v4.0.0</a></p> <h2>v3.1.3</h2> <h2>What's Changed</h2> <ul> <li>chore(github): remove trailing whitespaces by <a href="https://github.com/ljmf00"><code>@ljmf00</code></a> in <a href="https://redirect.github.com/actions/upload-artifact/pull/313">actions/upload-artifact#313</a></li> <li>Bump <code>@actions/artifact</code> version to v1.1.2 by <a href="https://github.com/bethanyj28"><code>@bethanyj28</code></a> in <a href="https://redirect.github.com/actions/upload-artifact/pull/436">actions/upload-artifact#436</a></li> </ul> <p><strong>Full Changelog</strong>: <a href="https://github.com/actions/upload-artifact/compare/v3...v3.1.3">https://github.com/actions/upload-artifact/compare/v3...v3.1.3</a></p> <h2>v3.1.2</h2> <ul> <li>Update all <code>@actions/*</code> NPM packages to their latest versions- <a href="https://redirect.github.com/actions/upload-artifact/issues/374">#374</a></li> <li>Update all dev dependencies to their most recent versions - <a href="https://redirect.github.com/actions/upload-artifact/issues/375">#375</a></li> </ul> <h2>v3.1.1</h2> <ul> <li>Update actions/core package to latest version to remove <code>set-output</code> deprecation warning <a href="https://redirect.github.com/actions/upload-artifact/issues/351">#351</a></li> </ul> <h2>v3.1.0</h2> <h2>What's Changed</h2> <ul> <li>Bump <code>@actions/artifact</code> to v1.1.0 (<a href="https://redirect.github.com/actions/upload-artifact/pull/327">actions/upload-artifact#327</a>) <ul> <li>Adds checksum headers on artifact upload (<a href="https://redirect.github.com/actions/toolkit/pull/1095">actions/toolkit#1095</a>) (<a href="https://redirect.github.com/actions/toolkit/pull/1063">actions/toolkit#1063</a>)</li> </ul> </li> </ul> </blockquote> </details> <details> <summary>Commits</summary> <ul> <li><a href="https://github.com/actions/upload-artifact/commit/c7d193f32edcb7bfad88892161225aeda64e9392"><code>c7d193f</code></a> Merge pull request <a href="https://redirect.github.com/actions/upload-artifact/issues/466">#466</a> from actions/v4-beta</li> <li><a href="https://github.com/actions/upload-artifact/commit/13131bb095770b4070a7477c3cd2d96e1c16d9f4"><code>13131bb</code></a> licensed cache</li> <li><a href="https://github.com/actions/upload-artifact/commit/4a6c273b9834f66a1d05c170dc3f80f9cdb9def1"><code>4a6c273</code></a> Merge branch 'main' into v4-beta</li> <li><a href="https://github.com/actions/upload-artifact/commit/f391bb91a3d3118aeca171c365bb319ece276b37"><code>f391bb9</code></a> Merge pull request <a href="https://redirect.github.com/actions/upload-artifact/issues/465">#465</a> from actions/robherley/v4-documentation</li> <li><a href="https://github.com/actions/upload-artifact/commit/9653d03c4b74c32144e02dae644fea70e079d4b3"><code>9653d03</code></a> Apply suggestions from code review</li> <li><a href="https://github.com/actions/upload-artifact/commit/875b63076402f25ef9d52c294c86ba4f97810575"><code>875b630</code></a> add limitations section</li> <li><a href="https://github.com/actions/upload-artifact/commit/ecb21463e93740a6be75c3116242169bfdbcb15a"><code>ecb2146</code></a> add compression example</li> <li><a href="https://github.com/actions/upload-artifact/commit/5e7604f84a055838f64ed68bb9904751523081ae"><code>5e7604f</code></a> trim some repeated info</li> <li><a href="https://github.com/actions/upload-artifact/commit/d6437d07581fe318a364512e6cf6b1dca6b4f92c"><code>d6437d0</code></a> naming</li> <li><a href="https://github.com/actions/upload-artifact/commit/1b561557037b4957d7d184e9aac02bec86c771eb"><code>1b56155</code></a> s/v4-beta/v4/g</li> <li>Additional commits viewable in <a href="https://github.com/actions/upload-artifact/compare/v3...v4">compare view</a></li> </ul> </details> <br /> [](https://docs.github.com/en/github/managing-security-vulnerabilities/about-dependabot-security-updates#about-compatibility-scores) Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting `@dependabot rebase`. [//]: # (dependabot-automerge-start) [//]: # (dependabot-automerge-end) --- <details> <summary>Dependabot commands and options</summary> <br /> You can trigger Dependabot actions by commenting on this PR: - `@dependabot rebase` will rebase this PR - `@dependabot recreate` will recreate this PR, overwriting any edits that have been made to it - `@dependabot merge` will merge this PR after your CI passes on it - `@dependabot squash and merge` will squash and merge this PR after your CI passes on it - `@dependabot cancel merge` will cancel a previously requested merge and block automerging - `@dependabot reopen` will reopen this PR if it is closed - `@dependabot close` will close this PR and stop Dependabot recreating it. You can achieve the same result by closing it manually - `@dependabot show <dependency name> ignore conditions` will show all of the ignore conditions of the specified dependency - `@dependabot ignore this major version` will close this PR and stop Dependabot creating any more for this major version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this minor version` will close this PR and stop Dependabot creating any more for this minor version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this dependency` will close this PR and stop Dependabot creating any more for this dependency (unless you reopen the PR or upgrade to it yourself) </details> Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Signed-off-by: Mark Graham <markgraham539@gmail.com>
Bumps [actions/setup-python](https://github.com/actions/setup-python) from 4 to 5. <details> <summary>Release notes</summary> <p><em>Sourced from <a href="https://github.com/actions/setup-python/releases">actions/setup-python's releases</a>.</em></p> <blockquote> <h2>v5.0.0</h2> <h2>What's Changed</h2> <p>In scope of this release, we update node version runtime from node16 to node20 (<a href="https://redirect.github.com/actions/setup-python/pull/772">actions/setup-python#772</a>). Besides, we update dependencies to the latest versions.</p> <p><strong>Full Changelog</strong>: <a href="https://github.com/actions/setup-python/compare/v4.8.0...v5.0.0">https://github.com/actions/setup-python/compare/v4.8.0...v5.0.0</a></p> <h2>v4.8.0</h2> <h2>What's Changed</h2> <p>In scope of this release we added support for GraalPy (<a href="https://redirect.github.com/actions/setup-python/pull/694">actions/setup-python#694</a>). You can use this snippet to set up GraalPy:</p> <pre lang="yaml"><code>steps: - uses: actions/checkout@v4 - uses: actions/setup-python@v4 with: python-version: 'graalpy-22.3' - run: python my_script.py </code></pre> <p>Besides, the release contains such changes as:</p> <ul> <li>Trim python version when reading from file by <a href="https://github.com/FerranPares"><code>@FerranPares</code></a> in <a href="https://redirect.github.com/actions/setup-python/pull/628">actions/setup-python#628</a></li> <li>Use non-deprecated versions in examples by <a href="https://github.com/jeffwidman"><code>@jeffwidman</code></a> in <a href="https://redirect.github.com/actions/setup-python/pull/724">actions/setup-python#724</a></li> <li>Change deprecation comment to past tense by <a href="https://github.com/jeffwidman"><code>@jeffwidman</code></a> in <a href="https://redirect.github.com/actions/setup-python/pull/723">actions/setup-python#723</a></li> <li>Bump <code>@babel/traverse</code> from 7.9.0 to 7.23.2 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/actions/setup-python/pull/743">actions/setup-python#743</a></li> <li>advanced-usage.md: Encourage the use actions/checkout@v4 by <a href="https://github.com/cclauss"><code>@cclauss</code></a> in <a href="https://redirect.github.com/actions/setup-python/pull/729">actions/setup-python#729</a></li> <li>Examples now use checkout@v4 by <a href="https://github.com/simonw"><code>@simonw</code></a> in <a href="https://redirect.github.com/actions/setup-python/pull/738">actions/setup-python#738</a></li> <li>Update actions/checkout to v4 by <a href="https://github.com/dmitry-shibanov"><code>@dmitry-shibanov</code></a> in <a href="https://redirect.github.com/actions/setup-python/pull/761">actions/setup-python#761</a></li> </ul> <h2>New Contributors</h2> <ul> <li><a href="https://github.com/FerranPares"><code>@FerranPares</code></a> made their first contribution in <a href="https://redirect.github.com/actions/setup-python/pull/628">actions/setup-python#628</a></li> <li><a href="https://github.com/timfel"><code>@timfel</code></a> made their first contribution in <a href="https://redirect.github.com/actions/setup-python/pull/694">actions/setup-python#694</a></li> <li><a href="https://github.com/jeffwidman"><code>@jeffwidman</code></a> made their first contribution in <a href="https://redirect.github.com/actions/setup-python/pull/724">actions/setup-python#724</a></li> </ul> <p><strong>Full Changelog</strong>: <a href="https://github.com/actions/setup-python/compare/v4...v4.8.0">https://github.com/actions/setup-python/compare/v4...v4.8.0</a></p> <h2>v4.7.1</h2> <h2>What's Changed</h2> <ul> <li>Bump word-wrap from 1.2.3 to 1.2.4 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/actions/setup-python/pull/702">actions/setup-python#702</a></li> <li>Add range validation for toml files by <a href="https://github.com/dmitry-shibanov"><code>@dmitry-shibanov</code></a> in <a href="https://redirect.github.com/actions/setup-python/pull/726">actions/setup-python#726</a></li> </ul> <p><strong>Full Changelog</strong>: <a href="https://github.com/actions/setup-python/compare/v4...v4.7.1">https://github.com/actions/setup-python/compare/v4...v4.7.1</a></p> <h2>v4.7.0</h2> <p>In scope of this release, the support for reading python version from pyproject.toml was added (<a href="https://redirect.github.com/actions/setup-python/pull/669">actions/setup-python#669</a>).</p> <pre lang="yaml"><code> - name: Setup Python uses: actions/setup-python@v4 </tr></table> </code></pre> </blockquote> <p>... (truncated)</p> </details> <details> <summary>Commits</summary> <ul> <li><a href="https://github.com/actions/setup-python/commit/0a5c61591373683505ea898e09a3ea4f39ef2b9c"><code>0a5c615</code></a> Update action to node20 (<a href="https://redirect.github.com/actions/setup-python/issues/772">#772</a>)</li> <li><a href="https://github.com/actions/setup-python/commit/0ae58361cdfd39e2950bed97a1e26aa20c3d8955"><code>0ae5836</code></a> Add example of GraalPy to docs (<a href="https://redirect.github.com/actions/setup-python/issues/773">#773</a>)</li> <li><a href="https://github.com/actions/setup-python/commit/b64ffcaf5b410884ad320a9cfac8866006a109aa"><code>b64ffca</code></a> update actions/checkout to v4 (<a href="https://redirect.github.com/actions/setup-python/issues/761">#761</a>)</li> <li><a href="https://github.com/actions/setup-python/commit/8d2896179abf658742de432b3f203d2c2d86a587"><code>8d28961</code></a> Examples now use checkout@v4 (<a href="https://redirect.github.com/actions/setup-python/issues/738">#738</a>)</li> <li><a href="https://github.com/actions/setup-python/commit/7bc6abb01e0555719edc2dbca70a2fde309e5e56"><code>7bc6abb</code></a> advanced-usage.md: Encourage the use actions/checkout@v4 (<a href="https://redirect.github.com/actions/setup-python/issues/729">#729</a>)</li> <li><a href="https://github.com/actions/setup-python/commit/e8111cec9d3dc15220d8a3b638f08419f57b906a"><code>e8111ce</code></a> Bump <code>@babel/traverse</code> from 7.9.0 to 7.23.2 (<a href="https://redirect.github.com/actions/setup-python/issues/743">#743</a>)</li> <li><a href="https://github.com/actions/setup-python/commit/a00ea43da65e7c04d2bdae58b3afecd77057eb9e"><code>a00ea43</code></a> add fix for graalpy ci (<a href="https://redirect.github.com/actions/setup-python/issues/741">#741</a>)</li> <li><a href="https://github.com/actions/setup-python/commit/8635b1ccc5934e73ed3510980fd2e7790b85839b"><code>8635b1c</code></a> Change deprecation comment to past tense (<a href="https://redirect.github.com/actions/setup-python/issues/723">#723</a>)</li> <li><a href="https://github.com/actions/setup-python/commit/f6cc428f535856f9c23558d01765a42a4d6cf758"><code>f6cc428</code></a> Use non-deprecated versions in examples (<a href="https://redirect.github.com/actions/setup-python/issues/724">#724</a>)</li> <li><a href="https://github.com/actions/setup-python/commit/5f2af211d616f86005883b44826180b21abb4060"><code>5f2af21</code></a> Add GraalPy support (<a href="https://redirect.github.com/actions/setup-python/issues/694">#694</a>)</li> <li>Additional commits viewable in <a href="https://github.com/actions/setup-python/compare/v4...v5">compare view</a></li> </ul> </details> <br /> [](https://docs.github.com/en/github/managing-security-vulnerabilities/about-dependabot-security-updates#about-compatibility-scores) Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting `@dependabot rebase`. [//]: # (dependabot-automerge-start) [//]: # (dependabot-automerge-end) --- <details> <summary>Dependabot commands and options</summary> <br /> You can trigger Dependabot actions by commenting on this PR: - `@dependabot rebase` will rebase this PR - `@dependabot recreate` will recreate this PR, overwriting any edits that have been made to it - `@dependabot merge` will merge this PR after your CI passes on it - `@dependabot squash and merge` will squash and merge this PR after your CI passes on it - `@dependabot cancel merge` will cancel a previously requested merge and block automerging - `@dependabot reopen` will reopen this PR if it is closed - `@dependabot close` will close this PR and stop Dependabot recreating it. You can achieve the same result by closing it manually - `@dependabot show <dependency name> ignore conditions` will show all of the ignore conditions of the specified dependency - `@dependabot ignore this major version` will close this PR and stop Dependabot creating any more for this major version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this minor version` will close this PR and stop Dependabot creating any more for this minor version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this dependency` will close this PR and stop Dependabot creating any more for this dependency (unless you reopen the PR or upgrade to it yourself) </details> Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Signed-off-by: Mark Graham <markgraham539@gmail.com>
Bumps [actions/download-artifact](https://github.com/actions/download-artifact) from 3 to 4. <details> <summary>Release notes</summary> <p><em>Sourced from <a href="https://github.com/actions/download-artifact/releases">actions/download-artifact's releases</a>.</em></p> <blockquote> <h2>v4.0.0</h2> <h2>What's Changed</h2> <p>The release of upload-artifact@v4 and download-artifact@v4 are major changes to the backend architecture of Artifacts. They have numerous performance and behavioral improvements.</p> <p>For more information, see the <a href="https://github.com/actions/toolkit/tree/main/packages/artifact"><code>@actions/artifact</code></a> documentation.</p> <h2>New Contributors</h2> <ul> <li><a href="https://github.com/bflad"><code>@bflad</code></a> made their first contribution in <a href="https://redirect.github.com/actions/download-artifact/pull/194">actions/download-artifact#194</a></li> </ul> <p><strong>Full Changelog</strong>: <a href="https://github.com/actions/download-artifact/compare/v3...v4.0.0">https://github.com/actions/download-artifact/compare/v3...v4.0.0</a></p> <h2>v3.0.2</h2> <ul> <li>Bump <code>@actions/artifact</code> to v1.1.1 - <a href="https://redirect.github.com/actions/download-artifact/pull/195">actions/download-artifact#195</a></li> <li>Fixed a bug in Node16 where if an HTTP download finished too quickly (<1ms, e.g. when it's mocked) we attempt to delete a temp file that has not been created yet <a href="hhttps://redirect.github.com/actions/toolkit/pull/1278">actions/toolkit#1278</a></li> </ul> <h2>v3.0.1</h2> <ul> <li><a href="https://redirect.github.com/actions/download-artifact/pull/178">Bump <code>@actions/core</code> to 1.10.0</a></li> </ul> </blockquote> </details> <details> <summary>Commits</summary> <ul> <li><a href="https://github.com/actions/download-artifact/commit/f44cd7b40bfd40b6aa1cc1b9b5b7bf03d3c67110"><code>f44cd7b</code></a> Merge pull request <a href="https://redirect.github.com/actions/download-artifact/issues/259">#259</a> from actions/robherley/glob-downloads</li> <li><a href="https://github.com/actions/download-artifact/commit/3181fe853d2c9a606cd326853bf4c5b8ced5df02"><code>3181fe8</code></a> add some migration docs</li> <li><a href="https://github.com/actions/download-artifact/commit/aaaac7b403f278b6b7eebdca69ca1658616f1c57"><code>aaaac7b</code></a> licensed cache</li> <li><a href="https://github.com/actions/download-artifact/commit/7c9182f0e18dadedfbca3189ab7a22a416aa6714"><code>7c9182f</code></a> update readme</li> <li><a href="https://github.com/actions/download-artifact/commit/b94e7015566b40b2de5eeeda514f239968da2dd7"><code>b94e701</code></a> licensed cache</li> <li><a href="https://github.com/actions/download-artifact/commit/0b55470e40ab7435f445813ebc18b1107ecf7e32"><code>0b55470</code></a> add test case for globbed downloads to same directory</li> <li><a href="https://github.com/actions/download-artifact/commit/0b51c2ef9042b581aded9711127e4a6d5f71c550"><code>0b51c2e</code></a> update prettier/eslint versions</li> <li><a href="https://github.com/actions/download-artifact/commit/c4c6db724f9510b2b3cff5ebcc417c87a2b2fa97"><code>c4c6db7</code></a> support globbing artifact list & merging download directory</li> <li><a href="https://github.com/actions/download-artifact/commit/1bd0606e08fcaa4c28afc1fc7d45830ab5482dac"><code>1bd0606</code></a> Merge pull request <a href="https://redirect.github.com/actions/download-artifact/issues/252">#252</a> from stchr/patch-1</li> <li><a href="https://github.com/actions/download-artifact/commit/eff4d42b1f6ff704c7a0f37152ed8793673560ef"><code>eff4d42</code></a> fix default for run-id</li> <li>Additional commits viewable in <a href="https://github.com/actions/download-artifact/compare/v3...v4">compare view</a></li> </ul> </details> <br /> [](https://docs.github.com/en/github/managing-security-vulnerabilities/about-dependabot-security-updates#about-compatibility-scores) Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting `@dependabot rebase`. [//]: # (dependabot-automerge-start) [//]: # (dependabot-automerge-end) --- <details> <summary>Dependabot commands and options</summary> <br /> You can trigger Dependabot actions by commenting on this PR: - `@dependabot rebase` will rebase this PR - `@dependabot recreate` will recreate this PR, overwriting any edits that have been made to it - `@dependabot merge` will merge this PR after your CI passes on it - `@dependabot squash and merge` will squash and merge this PR after your CI passes on it - `@dependabot cancel merge` will cancel a previously requested merge and block automerging - `@dependabot reopen` will reopen this PR if it is closed - `@dependabot close` will close this PR and stop Dependabot recreating it. You can achieve the same result by closing it manually - `@dependabot show <dependency name> ignore conditions` will show all of the ignore conditions of the specified dependency - `@dependabot ignore this major version` will close this PR and stop Dependabot creating any more for this major version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this minor version` will close this PR and stop Dependabot creating any more for this minor version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this dependency` will close this PR and stop Dependabot creating any more for this dependency (unless you reopen the PR or upgrade to it yourself) </details> Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Signed-off-by: Mark Graham <markgraham539@gmail.com>
…MONAI#7353) Bumps [peter-evans/slash-command-dispatch](https://github.com/peter-evans/slash-command-dispatch) from 3.0.1 to 3.0.2. <details> <summary>Release notes</summary> <p><em>Sourced from <a href="https://github.com/peter-evans/slash-command-dispatch/releases">peter-evans/slash-command-dispatch's releases</a>.</em></p> <blockquote> <h2>Slash Command Dispatch v3.0.2</h2> <h2>What's Changed</h2> <ul> <li>fix: replace use of any type by <a href="https://github.com/peter-evans"><code>@peter-evans</code></a> in <a href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/152">peter-evans/slash-command-dispatch#152</a></li> <li>fixing link to <code>Get a pull request</code> by <a href="https://github.com/Borda"><code>@Borda</code></a> in <a href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/270">peter-evans/slash-command-dispatch#270</a></li> <li>Update getting-started.md due to changes in Github UI by <a href="https://github.com/martin-displayr"><code>@martin-displayr</code></a> in <a href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/289">peter-evans/slash-command-dispatch#289</a></li> <li>[Security] Fix GraphQL query to get a collaborator's permission by <a href="https://github.com/0xn3va"><code>@0xn3va</code></a> in <a href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/301">peter-evans/slash-command-dispatch#301</a></li> <li>129 dependency updates by <a href="https://github.com/dependabot"><code>@dependabot</code></a></li> </ul> <h2>New Contributors</h2> <ul> <li><a href="https://github.com/Borda"><code>@Borda</code></a> made their first contribution in <a href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/270">peter-evans/slash-command-dispatch#270</a></li> <li><a href="https://github.com/martin-displayr"><code>@martin-displayr</code></a> made their first contribution in <a href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/289">peter-evans/slash-command-dispatch#289</a></li> <li><a href="https://github.com/0xn3va"><code>@0xn3va</code></a> made their first contribution in <a href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/301">peter-evans/slash-command-dispatch#301</a></li> </ul> <p><strong>Full Changelog</strong>: <a href="https://github.com/peter-evans/slash-command-dispatch/compare/v3.0.1...v3.0.2">https://github.com/peter-evans/slash-command-dispatch/compare/v3.0.1...v3.0.2</a></p> </blockquote> </details> <details> <summary>Commits</summary> <ul> <li><a href="https://github.com/peter-evans/slash-command-dispatch/commit/f996d7b7aae9059759ac55e978cff76d91853301"><code>f996d7b</code></a> Fix the CollaboratorPermission GraphQL query (<a href="https://redirect.github.com/peter-evans/slash-command-dispatch/issues/301">#301</a>)</li> <li><a href="https://github.com/peter-evans/slash-command-dispatch/commit/05b97d641c7ed206082e7984193d314070260d44"><code>05b97d6</code></a> build(deps-dev): bump <code>@types/node</code> from 16.18.65 to 16.18.67 (<a href="https://redirect.github.com/peter-evans/slash-command-dispatch/issues/300">#300</a>)</li> <li><a href="https://github.com/peter-evans/slash-command-dispatch/commit/8e7007329b5b0d971d44b9558606eed52edbdda6"><code>8e70073</code></a> build(deps-dev): bump eslint from 8.54.0 to 8.55.0 (<a href="https://redirect.github.com/peter-evans/slash-command-dispatch/issues/299">#299</a>)</li> <li><a href="https://github.com/peter-evans/slash-command-dispatch/commit/bd00135609f8bb0e709eea67f2a294f928fd1e7a"><code>bd00135</code></a> build(deps-dev): bump <code>@types/node</code> from 16.18.62 to 16.18.65 (<a href="https://redirect.github.com/peter-evans/slash-command-dispatch/issues/298">#298</a>)</li> <li><a href="https://github.com/peter-evans/slash-command-dispatch/commit/ee873b6d3d1e6ae67120bcfb3e807c1d11502741"><code>ee873b6</code></a> build(deps-dev): bump eslint from 8.53.0 to 8.54.0 (<a href="https://redirect.github.com/peter-evans/slash-command-dispatch/issues/296">#296</a>)</li> <li><a href="https://github.com/peter-evans/slash-command-dispatch/commit/44abc47f988dc0de6261fb54747b79de67b6af0d"><code>44abc47</code></a> build(deps-dev): bump <code>@types/node</code> from 16.18.61 to 16.18.62 (<a href="https://redirect.github.com/peter-evans/slash-command-dispatch/issues/295">#295</a>)</li> <li><a href="https://github.com/peter-evans/slash-command-dispatch/commit/19ad7b830c1554acf2ccefe7f3ff5566750d5e9b"><code>19ad7b8</code></a> build(deps-dev): bump <code>@types/node</code> from 16.18.60 to 16.18.61 (<a href="https://redirect.github.com/peter-evans/slash-command-dispatch/issues/294">#294</a>)</li> <li><a href="https://github.com/peter-evans/slash-command-dispatch/commit/29a9815e9ffe9a5b9b4367e4b76770bcb468a7e7"><code>29a9815</code></a> build(deps-dev): bump prettier from 3.0.3 to 3.1.0 (<a href="https://redirect.github.com/peter-evans/slash-command-dispatch/issues/293">#293</a>)</li> <li><a href="https://github.com/peter-evans/slash-command-dispatch/commit/ade03097a3cb6e69e3ed86210ec745493dacf6bc"><code>ade0309</code></a> build(deps-dev): bump eslint from 8.52.0 to 8.53.0 (<a href="https://redirect.github.com/peter-evans/slash-command-dispatch/issues/292">#292</a>)</li> <li><a href="https://github.com/peter-evans/slash-command-dispatch/commit/fc8222e6761738cc303ace6ed030f7fe63d6da0c"><code>fc8222e</code></a> build(deps-dev): bump <code>@types/node</code> from 16.18.59 to 16.18.60 (<a href="https://redirect.github.com/peter-evans/slash-command-dispatch/issues/291">#291</a>)</li> <li>Additional commits viewable in <a href="https://github.com/peter-evans/slash-command-dispatch/compare/v3.0.1...v3.0.2">compare view</a></li> </ul> </details> <br /> [](https://docs.github.com/en/github/managing-security-vulnerabilities/about-dependabot-security-updates#about-compatibility-scores) Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting `@dependabot rebase`. [//]: # (dependabot-automerge-start) [//]: # (dependabot-automerge-end) --- <details> <summary>Dependabot commands and options</summary> <br /> You can trigger Dependabot actions by commenting on this PR: - `@dependabot rebase` will rebase this PR - `@dependabot recreate` will recreate this PR, overwriting any edits that have been made to it - `@dependabot merge` will merge this PR after your CI passes on it - `@dependabot squash and merge` will squash and merge this PR after your CI passes on it - `@dependabot cancel merge` will cancel a previously requested merge and block automerging - `@dependabot reopen` will reopen this PR if it is closed - `@dependabot close` will close this PR and stop Dependabot recreating it. You can achieve the same result by closing it manually - `@dependabot show <dependency name> ignore conditions` will show all of the ignore conditions of the specified dependency - `@dependabot ignore this major version` will close this PR and stop Dependabot creating any more for this major version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this minor version` will close this PR and stop Dependabot creating any more for this minor version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this dependency` will close this PR and stop Dependabot creating any more for this dependency (unless you reopen the PR or upgrade to it yourself) </details> Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Signed-off-by: Mark Graham <markgraham539@gmail.com>
…tiplication (Project-MONAI#7326) Fixes Project-MONAI#7323 ### Description Give more useful exception when batch is considered during matrix multiplication. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com> Co-authored-by: Eric Kerfoot <17726042+ericspod@users.noreply.github.com> Signed-off-by: Mark Graham <markgraham539@gmail.com>
Fixes Project-MONAI#7222 ### Description remove int convert here. https://github.com/Project-MONAI/MONAI/blob/8fa6931b14ba9617a595fff1d396ac44cc82e207/monai/auto3dseg/analyzer.py#L259 ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com> Signed-off-by: Mark Graham <markgraham539@gmail.com>
…-MONAI#7381) Fixes Project-MONAI#7380. ### Description Mention [demo](https://github.com/Project-MONAI/tutorials/blob/main/modules/bending_energy_diffusion_loss_notes.ipynb) in bending energy and diffusion docstrings. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [x] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: kaibo <ktang@unc.edu> Signed-off-by: Mark Graham <markgraham539@gmail.com>
Workaround for Project-MONAI#7382 Project-MONAI#7383 ### Description Based on the comment [here](wkentaro/gdown#291 (comment)), pin the gdown version as a workaround. Will review this one once gdown has some update internal. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com> Signed-off-by: Mark Graham <markgraham539@gmail.com>
Fixes Project-MONAI#7394 ### Description When ImageFilter is in the transformation sequence it didn't pass the applied_operations. Now it is passed when present. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [x] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: axel.vlaminck <axel.vlaminck@gmail.com> Signed-off-by: Mark Graham <markgraham539@gmail.com>
Project-MONAI#7375) Fixes # . ### Description Add `compile` support in `SupervisedTrainer` and `SupervisedEvaluator`. Convert to `torch.Tensor` internally. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com> Co-authored-by: Eric Kerfoot <17726042+ericspod@users.noreply.github.com> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Signed-off-by: Mark Graham <markgraham539@gmail.com>
Fixes Project-MONAI#7407 ### Description Move `optional import cucim` inside the function to avoid using all GPUs. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Signed-off-by: Mark Graham <markgraham539@gmail.com>
…`ITKReader` (Project-MONAI#7415) Fixes Project-MONAI#7414 Fixes Project-MONAI#7371 ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com> Signed-off-by: Mark Graham <markgraham539@gmail.com>
Fixes Project-MONAI#7421 ### Description https://pypi.org/project/black/24.1.1/ ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com> Signed-off-by: Mark Graham <markgraham539@gmail.com>
Signed-off-by: Mark Graham <markgraham539@gmail.com>
marksgraham
force-pushed
the
6676_port_generative_engines
branch
from
826a0bd to
6faf4b2
Compare
Signed-off-by: Mark Graham <markgraham539@gmail.com>
7 tasks
|
i think this is ready to go unless there are any other comments to address? |
ericspod
approved these changes
Feb 1, 2024
|
/build |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Part of #6676 .
Description
A few sentences describing the changes proposed in this pull request.
Types of changes
./runtests.sh -f -u --net --coverage../runtests.sh --quick --unittests --disttests.make htmlcommand in thedocs/folder.