WebAssembly modules for genomics

Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.

Detecting contamination in NGS data and multi-species analysis

Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline

Nextflow Alignment Pipeline - DNAseq RNAseq

Snakemake pipeline for Popoolation and Popoolation2

🦠Research project in Bioinformatics Institute 2023-2024

Align short RNA seqeuncing reads to determine the length of of overhang

Bioconductor package: an R wrapper for Bowtie2 and AdapterRemoval

Panlineal is capable of generating Vgs from multiple genome alignments in form of lineal pan-genome. Combining short reads data, it can also detect the the allelism conduced by PAVs combinations of vast samples in a species.

This is a code tutorial for rna or dna sequence mapping by myself-RyanYip

Some scripts to make your bioinformatics analyses reproducible and a bit easy 🤓

A pipeline to run mapping, mash screen and assembly methods for pATLAS.

nextflow ATACseq pipeline for GG02

automating find_circ

Script to obtain plasmid id from WGS data using bowtie2 to map

RNA-seq code with Bowtie alignment and generating strain-specific counts using Emase

This is a repository for a seminar on Bowtie2 and its use of the Burrows-Wheeler Transform and FM-index in short-read sequence mapping.

This project explores the PBRM1-PIAS1 interaction in epithelial differentiation through ChIP-seq analysis, highlighting EZH2's role and implications for cholesterol biosynthesis in cellular processes.