#

maaslin2

Here are 4 public repositories matching this topic...

iliapopov17 / The-shadow-of-HIV

🦠Research project in Bioinformatics Institute 2023-2024

snakemake dna beta-diversity iontorrent hiv samtools bowtie2 relative-abundances alpha-diversity kraken2 differential-abundance-analysis maaslin2

Updated Aug 16, 2024
Jupyter Notebook

Zubair2021 / 16S_Microbiome_Analysis

This repository provides scripts for the 16S microbiome analysis and metagenome prediction using linux and R-Studio

pipeline deseq2 16s microbiota microbiome-analysis qiime2 maaslin2

Updated Oct 16, 2023
Shell

qplevier / geneset_visualisation_pipeline

snakemake cytoscape limma gsea wgcna maaslin2 enrichmentmap

Updated Jun 4, 2024
Java

PopovIILab / BatShotMetaFlow

🦇🧫📊Study on bat gut shotgun metagenomics

phylogenetics beta-diversity microbial-communities blast spades differential-abundance-analyses fastq-files refseq alpha-diversity prokka quast kraken2 abricate lab-journal maaslin2 shotgun-metagenomics fastani humann3 virsorter2

Updated Dec 23, 2024
HTML

Improve this page

Add a description, image, and links to the maaslin2 topic page so that developers can more easily learn about it.

Curate this topic

Add this topic to your repo

To associate your repository with the maaslin2 topic, visit your repo's landing page and select "manage topics."