Fast microbial species identification (16S rRNA gene-based approach) and contamination check using whole genome assemblies

Plasmidome analysis to track the transfer route of AMR genes in bacteria

Toxinotype assignment of Clostridium perfringens via ABRicate

This script is used to convert the output of ABRICATE tabulated output into a matrix samples with the genes as columns and the presence/absence of the gene as the values.

🦇🧫📊Supplementary materials for study on bat gut shotgun metagenomics