Package for fetching metadata and downloading data from SRA/ENA/GEO
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Oct 25, 2024 - Python
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sratoolkit
Here are 10 public repositories matching this topic...
GEO RNA-seq Experiments Processing Pipeline
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Oct 25, 2019 - R
dockerfile
bioinformatics
r
docker-image
fair
bioinformatics-data
bioinformatics-databases
sra-files
rpackage
sratoolkit
bioinformatics-tool
dbgap
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Jul 26, 2019 - Jupyter Notebook
fast utils for fetch and dump NCBI SRA archive raw data
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May 25, 2023 - Python
Download Raw Reads from SRA Archive
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Feb 8, 2018 - Nextflow
Decrypt the encrypted genome data files using SRA Toolkit
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Apr 6, 2019
RNA-seq code with Bowtie alignment and generating strain-specific counts using Emase
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Apr 4, 2022 - HTML
PARMIK is a fast and memory-efficient tool for identifying the "Partial Match" region between two genomic sequences.
smith-waterman
k-mer
k-mer-frequency
k-mer-hashing
genome-analysis
bwa-mem
metagenomic-analysis
blastn
sratoolkit
genome-alignment
dna-processing
environment-sampling
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Oct 18, 2024 - C++
explore sra databases and sequence retrieval
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Aug 17, 2024 - Shell
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