MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data
-
Updated
Aug 29, 2024 - Python
MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data
Precise phylogenetic analysis of microbial isolates and genomes from metagenomes
MaAsLin2: Microbiome Multivariate Association with Linear Models
bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validated tools and parameters.
High-quality circular representations of taxonomic and phylogenetic trees
Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles
ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then search for these markers in metagenomic data and determine the presence and abundance of the protein families of interest.
AnADAMA2 is the next generation of AnADAMA (Another Automated Data Analysis Management Application). AnADAMA is a tool to capture your workflow and execute it efficiently on your local machine or in a grid compute environment (ie. sun grid engine or slurm).
Large-scale Benchmarking of Microbial Multivariable Association Methods
MaAsLin is a multivariate statistical framework that finds associations between clinical metadata and potentially high-dimensional experimental data.
MMUPHin: Meta-analysis Methods with Uniform Pipeline for Heterogeneity in Microbiome Studies
The CCREPE (Compositionality Corrected by REnormalizaion and PErmutation) package is designed to assess the significance of general similarity measures in compositional datasets.
Add a description, image, and links to the biobakery topic page so that developers can more easily learn about it.
To associate your repository with the biobakery topic, visit your repo's landing page and select "manage topics."