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Make release v24.1 #3780

Merged
merged 773 commits into from
Jan 31, 2024
Merged

Make release v24.1 #3780

merged 773 commits into from
Jan 31, 2024
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Commits on Nov 27, 2023

  1. #3558 remove script for RPATH adjustment

    @agriyakhetarpal
    agriyakhetarpal committed Nov 27, 2023
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  2. #3558 enable comment to disable build isolation

    @agriyakhetarpal
    agriyakhetarpal committed Nov 27, 2023
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  3. Remove GOVERNANCE.md (#3565)

    @Saransh-cpp
    Saransh-cpp committed Nov 27, 2023
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  4. Merge branch 'develop' into serialisation

    @pipliggins
    pipliggins committed Nov 27, 2023
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  5. #3558 cleanup jobs, skip PyPI deployment on forks

    @agriyakhetarpal
    agriyakhetarpal committed Nov 27, 2023
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  6. #3558 cover Windows wheel job with tests

    @agriyakhetarpal
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  7. Merge pull request #3557 from Saransh-cpp/ruff-config 

    Move ruff, coverage, and pytest configs to pyproject.toml
    @Saransh-cpp
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  8. Sync lower bounds with conda package

    @Saransh-cpp
    Saransh-cpp committed Nov 27, 2023
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Commits on Nov 28, 2023

  1. Add outputs to example notebook 

    Fixes doctests error
    @pipliggins
    pipliggins committed Nov 28, 2023
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  2. style: pre-commit fixes

    @pre-commit-ci
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  3. Fix ruff errors

    @pipliggins
    pipliggins committed Nov 28, 2023
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  4. #2188 implement evaluate at in 1D

    @rtimms
    rtimms committed Nov 28, 2023
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  5. Merge pull request #3397 from pipliggins/serialisation 

    Serialisation of models
    @martinjrobins
    martinjrobins committed Nov 28, 2023
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  6. #2188 changelog and coverage

    @rtimms
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  7. #2188 merge develop

    @rtimms
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  8. Merge pull request #3570 from Saransh-cpp/lower-bounds 

    Sync lower bounds with conda package
    @Saransh-cpp
    Saransh-cpp committed Nov 28, 2023
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Commits on Nov 29, 2023

  1. reverted changes from 3c59897

    @AbhishekChaudharii
    AbhishekChaudharii committed Nov 29, 2023
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  2. #2188 valentin comments

    @rtimms
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  3. value can be a 2-column array added in steps.py

    @AbhishekChaudharii
    AbhishekChaudharii committed Nov 29, 2023
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  4. style: pre-commit fixes

    @pre-commit-ci
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  5. #2188 merge develop

    @rtimms
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  6. #2188 debug domains

    @rtimms
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  7. #2188 add 3E notebook to toctree

    @rtimms
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  8. #2188 coverage

    @rtimms
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  9. Added "parameter_info" and modified "print_parameter_info"

    @cringeyburger
    cringeyburger committed Nov 29, 2023
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  10. add omega

    @aabills
    aabills committed Nov 29, 2023
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  11. fix test failure

    @aabills
    aabills committed Nov 29, 2023
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  12. add youngs modulus

    @aabills
    aabills committed Nov 29, 2023
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Commits on Nov 30, 2023

  1. Use next(iter()) to evaluate casadi search paths 

    Co-authored-by: Saransh Chopra <saransh0701@gmail.com>
    @agriyakhetarpal @Saransh-cpp
    agriyakhetarpal and Saransh-cpp committed Nov 30, 2023
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  2. Merge branch 'develop' into i3558-repair-wheel

    @agriyakhetarpal
    agriyakhetarpal committed Nov 30, 2023
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Commits on Dec 1, 2023

  1. #3558 try to initialise IDAKLU solver instead of just importing it

    @agriyakhetarpal
    agriyakhetarpal committed Dec 1, 2023
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  2. pre commit command change

    @shubhambhar007
    shubhambhar007 committed Dec 1, 2023
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  3. pre commit command change

    @shubhambhar007
    shubhambhar007 committed Dec 1, 2023
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  4. pre commit command change

    @shubhambhar007
    shubhambhar007 committed Dec 1, 2023
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  5. added simple example and fix

    @Scottmar93
    Scottmar93 committed Dec 1, 2023
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  6. #3558 #3100 keep equal casadi dependency versions

    @agriyakhetarpal
    agriyakhetarpal committed Dec 1, 2023
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  7. #3558 #3100 Don't use a default path to search for alternative `casad… 

    …i` installations

Co-Authored-By: jsbrittain <98161205+jsbrittain@users.noreply.github.com>
    @agriyakhetarpal @jsbrittain
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Commits on Dec 3, 2023

  1. test commands

    @shubhambhar007
    shubhambhar007 committed Dec 3, 2023
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  2. reverted change log

    @shubhambhar007
    shubhambhar007 committed Dec 3, 2023
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  3. Added docstrings and exception handling to parameter_info and print_p… 

    …arameter_info
    @cringeyburger
    cringeyburger committed Dec 3, 2023
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  4. Added Issue 3361 to features' section of CHANGELOG.md

    @cringeyburger
    cringeyburger committed Dec 3, 2023
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Commits on Dec 4, 2023

  1. Fix bug #3543 by summing the irreversible and reversible heating term… 

    …s over the phases in the BaseThermal class. To do so, the entropic change dUdT variables are stored for each phase in the BaseOpenCircuitPotential class.
    @chmabaur
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  2. Run pre-commit checks that were forgotten in the last commit

    @chmabaur
    chmabaur committed Dec 4, 2023
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  3. reverted changes

    @shubhambhar007
    shubhambhar007 committed Dec 4, 2023
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Commits on Dec 5, 2023

  1. docs: update README.md [skip ci]

    @allcontributors
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  2. docs: update .all-contributorsrc [skip ci]

    @allcontributors
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  3. Merge pull request #3586 from chmabaur/issue-3543-thermal 

    Fix Issue 3543 - Thermal model not working for a composite electrode particle model with two (or more) phases
    @valentinsulzer
    valentinsulzer committed Dec 5, 2023
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  4. update changelog

    @aabills
    aabills committed Dec 5, 2023
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  5. make partial molar volume also a function of temperature

    @aabills
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  6. Merge pull request #3588 from pybamm-team/all-contributors/add-chmabaur 

    docs: add chmabaur as a contributor for bug, and code
    @valentinsulzer
    valentinsulzer committed Dec 5, 2023
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  7. Merge pull request #3576 from abillscmu/omega-stoich-2 

    Make mechanical properties a function of stoichiometry and sometimes temperature
    @valentinsulzer
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  8. Implemented "get_parameter_info" to return a dictionary of parameters… 

    … and modified "print_parameter_info" to print the dictionary
    @cringeyburger
    cringeyburger committed Dec 5, 2023
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  9. fixed T and sto order in example

    @Scottmar93
    Scottmar93 committed Dec 5, 2023
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  10. Merge branch 'pybamm-team:develop' into issue_3392_improve_documentation

    @AbhishekChaudharii
    AbhishekChaudharii committed Dec 5, 2023
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  11. removed cccv_ode

    @AbhishekChaudharii
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  12. style: pre-commit fixes

    @pre-commit-ci
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  13. removed cccv_ode - fix

    @AbhishekChaudharii
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  14. Improved readability

    @cringeyburger
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  15. #2188 changelog

    @rtimms
    rtimms committed Dec 5, 2023
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  16. Merge pull request #3582 from pybamm-team/minimal-example-of-lookup-t… 

    …ables

Diffusion coefficient as 2D interpolant
    @valentinsulzer
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  17. Merge pull request #3580 from shubhambhar007/shubham/pre_commit 

    Style checker on PRs does not actually check anything #3571
    @Saransh-cpp
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  18. Merge pull request #3573 from pybamm-team/issue-2188-evaluate-at 

    #2188 implement evaluate at in 1D
    @rtimms
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Commits on Dec 6, 2023

  1. #3530 add classes to handle termination

    @valentinsulzer
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  2. Merge branch 'develop' into issue-3530-custom-termination

    @valentinsulzer
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  3. Issue 3392 improve documentation (#3474) 

    * Added docstring for print_parameter_info method

* PEP8 adherence for One-line docstring

* Mentioned that arrays can be passed as values for drive cycles.

* reverted changes from  3c59897

* value can be a 2-column array added in steps.py

* style: pre-commit fixes

* removed cccv_ode

* style: pre-commit fixes

* removed cccv_ode - fix

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
    @AbhishekChaudharii @pre-commit-ci
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  4. docs: add AbhishekChaudharii as a contributor for doc (#3594) 

    * docs: update README.md [skip ci]

* docs: update .all-contributorsrc [skip ci]

---------

Co-authored-by: allcontributors[bot] <46447321+allcontributors[bot]@users.noreply.github.com>
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  5. docs: add shubhambhar007 as a contributor for infra (#3595) 

    * docs: update README.md [skip ci]

* docs: update .all-contributorsrc [skip ci]

---------

Co-authored-by: allcontributors[bot] <46447321+allcontributors[bot]@users.noreply.github.com>
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  6. #3530 docs and example

    @valentinsulzer
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  7. #3530 test

    @valentinsulzer
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  8. changelog

    @valentinsulzer
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  9. Merge branch 'develop' into issue-3530-custom-termination

    @valentinsulzer
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  10. Added docstrings and modified "get_parameter_info" to store the entir… 

    …e parameters instead of their names
    @cringeyburger
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  11. Implemented a parameter table to print parameter info, from"print_par… 

    …ameter_info" (initial version)
    @cringeyburger
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Commits on Dec 7, 2023

  1. parameter table size optimisation and code formatting

    @cringeyburger
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  2. Made the parameter table dynamic and modified docstrings of "get_para… 

    …meter_info" and "print_parameter_info"
    @cringeyburger
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  3. Added "get_parameter_info" and modified information about "print_para… 

    …meter_info" in CHANGELOG.md
    @cringeyburger
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  4. Update changelog about breaking change for Jax solver

    @agriyakhetarpal
    agriyakhetarpal committed Dec 7, 2023
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  5. #3443 Add minimal docs about Windows and Python support

    @agriyakhetarpal
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  6. Merge branch 'develop' into bump-jax-jaxlib-versions

    @agriyakhetarpal
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  7. Merge branch 'develop' into issue-3361-improve-print_parameter_info-f… 

    …unctionality
    @cringeyburger
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  8. Update pybamm/models/base_model.py

    @valentinsulzer
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  9. #3530 fix tests and examples, try fixing docs

    @valentinsulzer
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  10. more doctest formatting

    @valentinsulzer
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Commits on Dec 8, 2023

  1. configure doctest so we don't have to import pybamm

    @valentinsulzer
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  2. fix accidentally removed code

    @valentinsulzer
    valentinsulzer committed Dec 8, 2023
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  3. Update pybamm/expression_tree/symbol.py 

    Co-authored-by: Agriya Khetarpal <74401230+agriyakhetarpal@users.noreply.github.com>
    @valentinsulzer @agriyakhetarpal
    valentinsulzer and agriyakhetarpal committed Dec 8, 2023
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  4. Merge branch 'doctest-conf' into issue-3530-custom-termination

    @valentinsulzer
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  5. Added documentation for filename argrument in simulation.py

    @AbhishekChaudharii
    AbhishekChaudharii committed Dec 8, 2023
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  6. Merge branch 'pybamm-team:develop' into issue_3392_improve_API_docume… 

    …ntation
    @AbhishekChaudharii
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  7. Merge pull request #3600 from pybamm-team/doctest-conf 

    configure doctest so we don't have to import pybamm
    @valentinsulzer
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  8. Merge pull request #3550 from agriyakhetarpal/bump-jax-jaxlib-versions 

    Upgrade to newest versions of `jax` + `jaxlib` and add Windows support for JAX Solver
    @Saransh-cpp
    Saransh-cpp committed Dec 8, 2023
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  9. docs

    @valentinsulzer
    valentinsulzer committed Dec 8, 2023
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  10. fix docs and coverage

    @valentinsulzer
    valentinsulzer committed Dec 8, 2023
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  11. Merge branch 'develop' into support-python-3.12

    @agriyakhetarpal
    agriyakhetarpal committed Dec 8, 2023
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  12. try fixing docs

    @valentinsulzer
    valentinsulzer committed Dec 8, 2023
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  13. Check coverage on 3.11 for now

    @agriyakhetarpal
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  14. Ignore pytest cache

    @agriyakhetarpal
    agriyakhetarpal committed Dec 8, 2023
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  15. Mention unavailability of [odes] on Python 3.12

    @agriyakhetarpal
    agriyakhetarpal committed Dec 8, 2023
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  16. Add Python 3.12 support and trove classifier

    @agriyakhetarpal
    agriyakhetarpal committed Dec 8, 2023
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  17. Remove references to and imports of distutils

    @agriyakhetarpal
    agriyakhetarpal committed Dec 8, 2023
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  18. Add checks revolving Python 3.12 and [odes]

    @agriyakhetarpal
    agriyakhetarpal committed Dec 8, 2023
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  19. Update CHANGELOG to reflect Python 3.12 support

    @agriyakhetarpal
    agriyakhetarpal committed Dec 8, 2023
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  20. coverage again

    @valentinsulzer
    valentinsulzer committed Dec 8, 2023
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  21. update comment

    @valentinsulzer
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  22. Merge pull request #3602 from AbhishekChaudharii/issue_3392_improve_A… 

    …PI_documentation

pybamm.Simulation.save, filename arg is not documented
    @valentinsulzer
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  23. Merge pull request #3596 from pybamm-team/issue-3530-custom-termination 

    Issue 3530 custom termination
    @valentinsulzer
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Commits on Dec 9, 2023

  1. Merge branch 'develop' into support-python-3.12

    @agriyakhetarpal
    agriyakhetarpal committed Dec 9, 2023
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  2. Fix editable installation error

    @agriyakhetarpal
    agriyakhetarpal committed Dec 9, 2023
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Commits on Dec 10, 2023

  1. Modified "get_parameter_info" and "print_parameter_info" to store and… 

    … print parameter info from a dictionary. Modified "print_parameter_info" to store the info in a list "table" and then print it.
    @cringeyburger
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  2. Merge remote-tracking branch 'origin/issue-3361-improve-print_paramet… 

    …er_info-functionality' into issue-3361-improve-print_parameter_info-functionality

# Conflicts:
#	pybamm/models/base_model.py
    @cringeyburger
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  3. Modified "get_parameter_info" and "print_parameter_info" to store and… 

    … print parameter info from a dictionary. Modified "print_parameter_info" to store the info in a list "table" and then print it.
    @cringeyburger
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  4. Updated all instances of "_parameter_info" with "get_parameter_info" … 

    …and corrected method mentioned in "1.9. Finding the parameters in a model" in "parameterization.ipynb" notebook
    @cringeyburger
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  5. Merge branch 'develop' into issue-3361-improve-print_parameter_info-f… 

    …unctionality
    @cringeyburger
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Commits on Dec 11, 2023

  1. chore: update pre-commit hooks 

    updates:
- [github.com/astral-sh/ruff-pre-commit: v0.1.6 → v0.1.7](astral-sh/ruff-pre-commit@v0.1.6...v0.1.7)
    @pre-commit-ci
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Commits on Dec 12, 2023

  1. Merge pull request #3607 from pybamm-team/pre-commit-ci-update-config 

    chore: update pre-commit hooks
    @valentinsulzer
    valentinsulzer committed Dec 12, 2023
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  2. Style and docstring modifications

    @cringeyburger
    cringeyburger committed Dec 12, 2023
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  3. Bump actions/setup-python from 4 to 5 (#3608) 

    Bumps [actions/setup-python](https://github.com/actions/setup-python) from 4 to 5.
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](actions/setup-python@v4...v5)

---
updated-dependencies:
- dependency-name: actions/setup-python
  dependency-type: direct:production
  update-type: version-update:semver-major
...

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Commits on Dec 14, 2023

  1. Added conditions to workflows to be skiped (#3616) 

    Added conditions to workflows of value only to PyBaMM so they always be skipped in forks.
    @jlauber18
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  2. docs: add jlauber18 as a contributor for infra (#3619) 

    * docs: update README.md [skip ci]

* docs: update .all-contributorsrc [skip ci]

---------

Co-authored-by: allcontributors[bot] <46447321+allcontributors[bot]@users.noreply.github.com>
    @allcontributors
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  3. #3558 build SuiteSparse with INSTALL_RPATH

    @agriyakhetarpal
    agriyakhetarpal committed Dec 14, 2023
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  4. #3558 Remove some unused CMake arguments 

    CMake showed a warning about these arguments not being used during the compilation of the project.
    @agriyakhetarpal
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  5. #3558 Remove SuiteSparse macOS RPATH fixer script

    @agriyakhetarpal
    agriyakhetarpal committed Dec 14, 2023
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  6. #3361 #3558 Improve caching and remove examples/

    @agriyakhetarpal
    agriyakhetarpal committed Dec 14, 2023
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  7. Merge branch 'develop' into i3558-repair-wheel

    @agriyakhetarpal
    agriyakhetarpal committed Dec 14, 2023
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  8. #3558 Remove scripts/fix_suitesparse_rpath_mac.sh

    @agriyakhetarpal
    agriyakhetarpal committed Dec 14, 2023
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  9. Changing pyproject config

    @prady0t
    prady0t committed Dec 14, 2023
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  10. changed string formatting using pyupgrade 

    Signed-off-by: Pradyot Ranjan <99216956+pradyotRanjan@users.noreply.github.com>
    @prady0t
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  11. added commit hash 

    Signed-off-by: Pradyot Ranjan <99216956+pradyotRanjan@users.noreply.github.com>
    @prady0t
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  12. #3558 Set BUILD AND INSTALL RPATHs correctly 

    SuiteSparse dynamic libraries were being repeated in the list of paths without this configuration. Setting build rpaths for AMD, COLAMD, BTF, and KLU ensures that they do not reference the SuiteSparse config in the build folder but the one that is installed into the install prefix.
    @agriyakhetarpal
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  13. style: pre-commit fixes

    @pre-commit-ci
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  14. Apply suggestions from code review 

    Co-authored-by: Saransh Chopra <saransh0701@gmail.com>
Co-authored-by: Agriya Khetarpal <74401230+agriyakhetarpal@users.noreply.github.com>
    @prady0t @Saransh-cpp @agriyakhetarpal
    3 people committed Dec 14, 2023
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  15. Merge branch 'pybamm-team:develop' into feat/smoothmin

    @kratman
    kratman committed Dec 14, 2023
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Commits on Dec 15, 2023

  1. Update pyproject.toml 

    Co-authored-by: Saransh Chopra <saransh0701@gmail.com>
    @prady0t @Saransh-cpp
    prady0t and Saransh-cpp committed Dec 15, 2023
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  2. Merge pull request #3579 from prady0t/new-format-fix 

    Using pyupgrade to convert string formatting to `f-string`.
    @Saransh-cpp
    Saransh-cpp committed Dec 15, 2023
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  3. docs: add prady0t as a contributor for infra (#3620) 

    * docs: update README.md [skip ci]

* docs: update .all-contributorsrc [skip ci]

---------

Co-authored-by: allcontributors[bot] <46447321+allcontributors[bot]@users.noreply.github.com>
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Commits on Dec 16, 2023

  1. Resolve merge conflicts & merge to develop

    @arjxn-py
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  2. Merge branch 'develop' into install_odes

    @arjxn-py
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  3. Merge pull request #3584 from cringeyburger/issue-3361-improve-print_… 

    …parameter_info-functionality

Issue 3361 - Improve print_parameter_info functionality
    @valentinsulzer
    valentinsulzer committed Dec 16, 2023
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Commits on Dec 17, 2023

  1. Prevent separate function to install dependencies

    @arjxn-py
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Commits on Dec 18, 2023

  1. Bump actions/download-artifact from 3 to 4 

    Bumps [actions/download-artifact](https://github.com/actions/download-artifact) from 3 to 4.
- [Release notes](https://github.com/actions/download-artifact/releases)
- [Commits](actions/download-artifact@v3...v4)

---
updated-dependencies:
- dependency-name: actions/download-artifact
  dependency-type: direct:production
  update-type: version-update:semver-major
...

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  2. Bump actions/upload-artifact from 3 to 4 

    Bumps [actions/upload-artifact](https://github.com/actions/upload-artifact) from 3 to 4.
- [Release notes](https://github.com/actions/upload-artifact/releases)
- [Commits](actions/upload-artifact@v3...v4)

---
updated-dependencies:
- dependency-name: actions/upload-artifact
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
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Commits on Dec 19, 2023

  1. fix a value error in function electrolyte_diffusivity_Ai2020

    @XuboGU
    XuboGU committed Dec 19, 2023
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  2. chore: update pre-commit hooks (#3632) 

    updates:
- [github.com/astral-sh/ruff-pre-commit: v0.1.7 → v0.1.8](astral-sh/ruff-pre-commit@v0.1.7...v0.1.8)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
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  3. Unique names for artifacts

    @Saransh-cpp
    Saransh-cpp committed Dec 19, 2023
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  4. Sync artifact names with the upload action

    @Saransh-cpp
    Saransh-cpp committed Dec 19, 2023
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  5. Merge pull request #3531 from agriyakhetarpal/support-python-3.12 

    Support Python 3.12
    @Saransh-cpp
    Saransh-cpp committed Dec 19, 2023
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  6. #3100 bump vcpkg baseline for casadi 3.6.4

    @agriyakhetarpal
    agriyakhetarpal committed Dec 19, 2023
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  7. #3100 #3193 Add note for keeping casadi version in sync

    @agriyakhetarpal
    agriyakhetarpal committed Dec 19, 2023
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  8. Merge pull request #3634 from pybamm-team/dependabot/github_actions/a… 

    …ctions/upload-artifact-4

Bump actions/upload-artifact from 3 to 4
    @Saransh-cpp
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  9. Merge pull request #3633 from pybamm-team/dependabot/github_actions/a… 

    …ctions/download-artifact-4

Bump actions/download-artifact from 3 to 4
    @Saransh-cpp
    Saransh-cpp committed Dec 19, 2023
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  10. Merge pull request #3635 from XuboGU/develop 

    fix a value error in function `electrolyte_diffusivity_Ai2020` in `Ai2020.py`
    @valentinsulzer
    valentinsulzer committed Dec 19, 2023
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  11. docs: update README.md [skip ci]

    @allcontributors
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  12. docs: update .all-contributorsrc [skip ci]

    @allcontributors
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  13. Merge pull request #3640 from pybamm-team/all-contributors/add-XuboGU 

    docs: add XuboGU as a contributor for code, and bug
    @valentinsulzer
    valentinsulzer committed Dec 19, 2023
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  14. Remove initial conditions

    @kratman
    kratman committed Dec 19, 2023
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  15. Merge branch 'develop' into feat/smoothmin

    @kratman
    kratman committed Dec 19, 2023
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  16. style: pre-commit fixes

    @pre-commit-ci
    pre-commit-ci[bot] committed Dec 19, 2023
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  17. Change function names

    @kratman
    kratman committed Dec 19, 2023
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  18. Fix typo

    @kratman
    kratman committed Dec 19, 2023
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  19. Merge pull request #3642 from kratman/fix/removeInitialConds 

    Remove initial conditions
    @valentinsulzer
    valentinsulzer committed Dec 19, 2023
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Commits on Dec 20, 2023

  1. #3639 Fix Python CI by pre-installing setuptools

    @agriyakhetarpal
    agriyakhetarpal committed Dec 20, 2023
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  2. #3639 fix some more doctests failures

    @agriyakhetarpal
    agriyakhetarpal committed Dec 20, 2023
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  3. Check for shell files directly

    @arjxn-py
    arjxn-py committed Dec 20, 2023
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  4. Merge pull request #3645 from agriyakhetarpal/fix-python-3.12-ci 

    i3639 Fix Python 3.12 tests
    @valentinsulzer
    valentinsulzer committed Dec 20, 2023
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  5. Merge branch 'pybamm-team:develop' into feat/smoothmin

    @kratman
    kratman committed Dec 20, 2023
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Commits on Dec 21, 2023

  1. Improved error handling by raising TypeError when a str is passed to … 

    …Experiment instead of list of strings
    @AbhishekChaudharii
    AbhishekChaudharii committed Dec 21, 2023
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  2. style: pre-commit fixes

    @pre-commit-ci
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  3. Merge branch 'develop' into i3558-repair-wheel

    @agriyakhetarpal
    agriyakhetarpal committed Dec 21, 2023
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  4. #3646 fix parallel level, set environment variable

    @agriyakhetarpal
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  5. #3646 set parallel variable for build_ext (IDAKLU)

    @agriyakhetarpal
    agriyakhetarpal committed Dec 21, 2023
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  6. Merge pull request #3396 from kratman/feat/smoothmin 

    Add smooth min and smooth max
    @valentinsulzer
    valentinsulzer committed Dec 21, 2023
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Commits on Dec 22, 2023

  1. #3646 set parallel jobs for pybamm_install_odes

    @agriyakhetarpal
    agriyakhetarpal committed Dec 22, 2023
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  2. #3646 set parallel jobs for install_sundials.sh 

    for Linux wheel builds
    @agriyakhetarpal
    agriyakhetarpal committed Dec 22, 2023
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  3. Merge branch 'develop' into install_odes

    @arjxn-py
    arjxn-py committed Dec 22, 2023
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  4. Add note to avoid installation failure

    @arjxn-py
    arjxn-py committed Dec 22, 2023
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  5. improved type hinting and used annotations

    @AbhishekChaudharii
    AbhishekChaudharii committed Dec 22, 2023
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  6. Merge branch 'pybamm-team:develop' into casadi-windows-wheels

    @agriyakhetarpal
    agriyakhetarpal committed Dec 22, 2023
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Commits on Dec 23, 2023

  1. Updated docstrings to be in line with the type hints added

    @AbhishekChaudharii
    AbhishekChaudharii committed Dec 23, 2023
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  2. Add note for path validation

    @arjxn-py
    arjxn-py committed Dec 23, 2023
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  3. Apply suggestions from code review 

    Co-authored-by: Agriya Khetarpal <74401230+agriyakhetarpal@users.noreply.github.com>
    @arjxn-py @agriyakhetarpal
    arjxn-py and agriyakhetarpal committed Dec 23, 2023
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  4. Rename file & suggested fixes

    @arjxn-py
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  5. Set CMAKE_BUILD_PARALLEL_LEVEL

    @arjxn-py
    arjxn-py committed Dec 23, 2023
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  6. Fix broken doctree due to rename

    @arjxn-py
    arjxn-py committed Dec 23, 2023
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  7. Fix configurations and adhere to scientific python guidelines

    @Saransh-cpp
    Saransh-cpp committed Dec 23, 2023
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  8. List wheel as a build-dep, cleanup tabs v/s spaces

    @Saransh-cpp
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  9. Move to ruff format

    @Saransh-cpp
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  10. Fix config

    @Saransh-cpp
    Saransh-cpp committed Dec 23, 2023
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  11. add try with finally block

    @shubhambhar007
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  12. Ignore F821 for lithium-plating.ipynb

    @Saransh-cpp
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  13. Format everything

    @Saransh-cpp
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  14. Migrate to ruff-format

    @Saransh-cpp
    Saransh-cpp committed Dec 23, 2023
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  15. review

    @shubhambhar007
    shubhambhar007 committed Dec 23, 2023
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  16. Fix title underline

    @arjxn-py
    arjxn-py committed Dec 23, 2023
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  17. Fix table malformation

    @arjxn-py
    arjxn-py committed Dec 23, 2023
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  18. Add non-fixable link to .lycheeignore

    @arjxn-py
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  19. Merge pull request #3654 from Saransh-cpp/repo-review-1 

    Fix multiple configurations and adhere to scientific python guidelines
    @Saransh-cpp
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Commits on Dec 24, 2023

  1. Merge pull request #3656 from Saransh-cpp/ruff-format 

    Migrate to ruff format
    @Saransh-cpp
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  2. Merge develop

    @agriyakhetarpal
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  3. Merge branch 'develop' into install_odes

    @arjxn-py
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  4. style: pre-commit fixes

    @pre-commit-ci
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  5. Apply suggestions from code review 

    Co-authored-by: Agriya Khetarpal <74401230+agriyakhetarpal@users.noreply.github.com>
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Commits on Dec 25, 2023

  1. chore: update pre-commit hooks (#3663) 

    updates:
- [github.com/astral-sh/ruff-pre-commit: v0.1.8 → v0.1.9](astral-sh/ruff-pre-commit@v0.1.8...v0.1.9)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
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Commits on Dec 27, 2023

  1. ignore internal nbmake warnings - pytest (notebook tests) (#3665)

    @Saransh-cpp
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  2. Merge branch 'pybamm-team:develop' into install_odes

    @agriyakhetarpal
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Commits on Dec 31, 2023

  1. import jax.extended 

    Signed-off-by: Pradyot Ranjan <99216956+pradyotRanjan@users.noreply.github.com>
    @prady0t
    prady0t committed Dec 31, 2023
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Commits on Jan 1, 2024

  1. Use distinct names for macOS and Linux wheel artifacts (#3677)

    @agriyakhetarpal
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  2. Update license copyright year(s) (#3673) 

    * docs(license): update copyright year(s)

* docs(license): update copyright year(s)

---------

Co-authored-by: github-actions <github-actions@github.com>
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Commits on Jan 3, 2024

  1. docs: update README.md [skip ci]

    @allcontributors
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  2. docs: update .all-contributorsrc [skip ci]

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  3. Merge pull request #3680 from pybamm-team/all-contributors/add-Abhish… 

    …ekChaudharii

docs: add AbhishekChaudharii as a contributor for code, and doc
    @rtimms
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  4. Merge pull request #3671 from prady0t/fix-jax 

    Fixed Deprecation warnings of `jax_bdf_solver`
    @kratman
    kratman committed Jan 3, 2024
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  5. Merge pull request #3650 from AbhishekChaudharii/issue_3623 

    Improved error handling and added type hinting in Experiment
    @kratman
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  6. Merge develop again

    @agriyakhetarpal
    agriyakhetarpal committed Jan 3, 2024
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  7. Fix formatting

    @kratman
    kratman committed Jan 3, 2024
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  8. Merge pull request #3681 from kratman/fix/formatDevelop 

    Fix pre-commit on develop
    @kratman
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  9. Merge develop yet again

    @agriyakhetarpal
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  10. Merge branch 'develop' into i3558-repair-wheel

    @agriyakhetarpal
    agriyakhetarpal committed Jan 3, 2024
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  11. style: pre-commit fixes

    @pre-commit-ci
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  12. Merge pull request #3655 from shubhambhar007/shubham/doctests 

    Doctests do not remove built files if they fail #3389
    @kratman
    kratman committed Jan 3, 2024
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  13. Update JAX Imports

    @cringeyburger
    cringeyburger committed Jan 3, 2024
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  14. Merge pull request #3684 from cringeyburger/issue-3683-update-jax-imp… 

    …orts

Update JAX Imports
    @agriyakhetarpal
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  15. docs: update README.md [skip ci]

    @allcontributors
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  16. docs: update .all-contributorsrc [skip ci]

    @allcontributors
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Commits on Jan 4, 2024

  1. Merge pull request #3686 from pybamm-team/all-contributors/add-cringe… 

    …yburger

docs: add cringeyburger as a contributor for code
    @agriyakhetarpal
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Commits on Jan 5, 2024

  1. Degradation example update (#3691) 

    * fixed tests

* Added graphite half-cell parameter files

* Revert "Added graphite half-cell parameter files"

This reverts commit 78001e8.

* Revert "fixed tests"

This reverts commit cf53ff1.

* Restored original experiment protocol to coupled degradation example notebook

* changelog

* changelog
    @DrSOKane
    DrSOKane committed Jan 5, 2024
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  2. Use python -m pip invocation instead 

    Co-authored-by: Saransh Chopra <saransh0701@gmail.com>
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    agriyakhetarpal and Saransh-cpp committed Jan 5, 2024
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Commits on Jan 6, 2024

  1. #3646 set CMake parallelism for Windows wheels

    @agriyakhetarpal
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  2. #3646 Use os.cpu_count rather than processor affinity

    @agriyakhetarpal
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  3. Merge pull request #3569 from agriyakhetarpal/i3558-repair-wheel 

    i3558 improve wheel repair + add minimal IDAKLU test for built wheels
    @Saransh-cpp
    Saransh-cpp committed Jan 6, 2024
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  4. Merge pull request #3637 from agriyakhetarpal/casadi-windows-wheels 

    Update to `casadi` `3.6.4` for Windows wheels
    @Saransh-cpp
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  5. Merge pull request #3417 from arjxn-py/install_odes 

    Extend `pybamm_install_odes` to include support for macOS systems
    @Saransh-cpp
    Saransh-cpp committed Jan 6, 2024
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  6. Bump to v24.1rc0

    @Saransh-cpp
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  7. Fix up pytest minversion

    @agriyakhetarpal @Saransh-cpp
    agriyakhetarpal authored and Saransh-cpp committed Jan 6, 2024
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  8. Fix regex for version in pyproject.toml

    @Saransh-cpp
    Saransh-cpp committed Jan 6, 2024
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  9. Fix release issue tag

    @Saransh-cpp
    Saransh-cpp committed Jan 6, 2024
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  10. Use quotes

    @Saransh-cpp
    Saransh-cpp committed Jan 6, 2024
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  11. Update wheel_failure.md

    @Saransh-cpp
    Saransh-cpp committed Jan 6, 2024
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  12. Fix YAML

    @Saransh-cpp
    Saransh-cpp committed Jan 6, 2024
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Commits on Jan 16, 2024

  1. Fix docs about Jax solver compatibility with Python versions (#3702) 

    * Ensure correct Python versions for Jax solver compatibility

* Simplify array of Python versions

Co-authored-by: Eric G. Kratz <kratman@users.noreply.github.com>

* Use different conjunction

Co-authored-by: Eric G. Kratz <kratman@users.noreply.github.com>

---------

Co-authored-by: Eric G. Kratz <kratman@users.noreply.github.com>
    @agriyakhetarpal @kratman @Saransh-cpp
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  2. Merge pull request #3706 from agriyakhetarpal/fix-pybamm-install-odes 

    Make `pybamm_install_odes` a bit more robust
    @agriyakhetarpal @Saransh-cpp
    agriyakhetarpal authored and Saransh-cpp committed Jan 16, 2024
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  3. #3690 fix issue with skipped steps (#3708) 

    * #3690 fix issue with skipped steps

* #3690 changelog

* #3690 add test
    @rtimms @Saransh-cpp
    rtimms authored and Saransh-cpp committed Jan 16, 2024
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  4. #3611 use actual cell volume for average total heating (#3707) 

    * #3611 use actual cell volume for average total heating

* #3611 changelog

* #3611 account for number of electrode pairs

* #3611 update variable names
    @rtimms @Saransh-cpp
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Commits on Jan 17, 2024

  1. Improve the release workflow (#3737) 

    * Try fixing the release workflow

* Turn off safety

* Fix CHANGELOG

* Add OS

* Use regex for better matches

* Update instructions, add safety checks

* checkout to the version branch for the final release
    @Saransh-cpp
    Saransh-cpp committed Jan 17, 2024
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  2. Bump to v24.1rc1

    @Saransh-cpp
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Commits on Jan 24, 2024

  1. #3630 fix interpolant shape error (#3761) 

    * #3630 fix interpolant shape error

* #3630 changelog
    @rtimms @Saransh-cpp
    rtimms authored and Saransh-cpp committed Jan 24, 2024
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  2. Bump to v24.1rc2

    @Saransh-cpp
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Commits on Jan 29, 2024

  1. Bump to v24.1

    @Saransh-cpp
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  2. Resolve conflicts

    @Saransh-cpp
    Saransh-cpp committed Jan 29, 2024
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Commits on Jan 30, 2024

  1. Fix doctests failures in scheduled tests (#3784) 

    Closes #3781
    @agriyakhetarpal @Saransh-cpp
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  2. Resolve broken scikits.odes installation on self-hosted M-series ru… 

    …nner (#3785)

* Try fixing M-series runner tests

This is being done by adding SuiteSparse and SUNDIALS installations which might have been missing on the runner, which broke `scikits.odes`.

* Don't use Homebrew SUNDIALS, use LD_LIBRARY_PATH

* Don't use Homebrew to install SUNDIALS

* Force remove pip cache for `scikits.odes`

---------

Co-authored-by: Eric G. Kratz <kratman@users.noreply.github.com>
    @agriyakhetarpal @kratman @Saransh-cpp
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