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Failing doctests in the CI #3781

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Saransh-cpp opened this issue Jan 29, 2024 · 1 comment · Fixed by #3784
Closed

Failing doctests in the CI #3781

Saransh-cpp opened this issue Jan 29, 2024 · 1 comment · Fixed by #3784
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@agriyakhetarpal
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difficulty: easy A good issue for someone new. Can be done in a few hours priority: high To be resolved as soon as possible

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@Saransh-cpp
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The doctests are failing on scheduled runs - https://github.com/pybamm-team/PyBaMM/actions/runs/7690636028/job/20954744741

I think the generated warnings are being treated as an error. The warning was un-suppressed in #3780.

cc: @agriyakhetarpal
@Saransh-cpp Saransh-cpp added difficulty: easy A good issue for someone new. Can be done in a few hours priority: high To be resolved as soon as possible labels Jan 29, 2024
@agriyakhetarpal agriyakhetarpal self-assigned this Jan 30, 2024
@agriyakhetarpal
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Will take a look later today and fix it

agriyakhetarpal added a commit that referenced this issue Jan 30, 2024
@agriyakhetarpal
Fix doctests failures in scheduled tests
9b3c767 
Closes #3781
@agriyakhetarpal agriyakhetarpal mentioned this issue Jan 30, 2024
Merged
6 tasks
kratman pushed a commit that referenced this issue Jan 30, 2024
@agriyakhetarpal
Fix doctests failures in scheduled tests (#3784)
83e45cb 
Closes #3781
Saransh-cpp pushed a commit that referenced this issue Jan 30, 2024
@agriyakhetarpal @Saransh-cpp
Fix doctests failures in scheduled tests (#3784)
e0ac58a 
Closes #3781
rtimms added a commit that referenced this issue May 16, 2024
@valentinsulzer @brosaplanella
@Saransh-cpp @martinjrobins @agriyakhetarpal @kratman @rtimms
add temperature dependence to MSMR model (#3832)
33d9ea7 
* Bump to v23.9rc0

* Merge pull request #3412 from agriyakhetarpal/drop-i686-manylinux2014-support

Drop support for i686 manylinux

* Merge pull request #3413 from Saransh-cpp/improve-release-workflow

Improve release workflow, add a note, bump version manually

* Merge pull request #3436 from Saransh-cpp/fortnightly-wheels

Build wheels on the 1st and 15th of every month

* Merge pull request #3445 from pybamm-team/issue-3428-rename-exchange

#3428 exchange-current density error

* Merge pull request #3449 from pybamm-team/i3431-windows-wheels

Fix failing windows wheel builds

* Merge pull request #3456 from abillscmu/issue-3224-initial_soc

make initial soc work with half cell models

* Merge pull request #3467 from abillscmu/bugfix/initial_soh

* Merge pull request #3423 from jsbrittain/jax_gpu

JaxSolver fails when using GPU support with no input parameters

* Fix changelog

* Merge pull request #3475 from arjxn-py/fix-default-imports

Resolve default imports for optional dependencies

* Bump - `v23.9rc1`

* Fix date in CHANGELOG

* Bump version to v23.9

* Fix docs about Jax solver compatibility with Python versions (#3702)

* Ensure correct Python versions for Jax solver compatibility

* Simplify array of Python versions

Co-authored-by: Eric G. Kratz <kratman@users.noreply.github.com>

* Use different conjunction

Co-authored-by: Eric G. Kratz <kratman@users.noreply.github.com>

---------

Co-authored-by: Eric G. Kratz <kratman@users.noreply.github.com>

* Merge pull request #3706 from agriyakhetarpal/fix-pybamm-install-odes

Make `pybamm_install_odes` a bit more robust

* #3690 fix issue with skipped steps (#3708)

* #3690 fix issue with skipped steps

* #3690 changelog

* #3690 add test

* #3611 use actual cell volume for average total heating (#3707)

* #3611 use actual cell volume for average total heating

* #3611 changelog

* #3611 account for number of electrode pairs

* #3611 update variable names

* Improve the release workflow (#3737)

* Try fixing the release workflow

* Turn off safety

* Fix CHANGELOG

* Add OS

* Use regex for better matches

* Update instructions, add safety checks

* checkout to the version branch for the final release

* Bump to v24.1rc1

* #3630 fix interpolant shape error (#3761)

* #3630 fix interpolant shape error

* #3630 changelog

* Bump to v24.1rc2

* Bump to v24.1

* Fix doctests failures in scheduled tests (#3784)

Closes #3781

* Resolve broken `scikits.odes` installation on self-hosted M-series runner (#3785)

* Try fixing M-series runner tests

This is being done by adding SuiteSparse and SUNDIALS installations which might have been missing on the runner, which broke `scikits.odes`.

* Don't use Homebrew SUNDIALS, use LD_LIBRARY_PATH

* Don't use Homebrew to install SUNDIALS

* Force remove pip cache for `scikits.odes`

---------

Co-authored-by: Eric G. Kratz <kratman@users.noreply.github.com>

* add temperature dependence to MSMR model

* changelog

* fix tests

* fix example

* rob comments

* update notebook

---------

Co-authored-by: Ferran Brosa Planella <Ferran.Brosa-Planella@warwick.ac.uk>
Co-authored-by: Saransh Chopra <saransh0701@gmail.com>
Co-authored-by: Martin Robinson <martinjrobins@gmail.com>
Co-authored-by: Agriya Khetarpal <74401230+agriyakhetarpal@users.noreply.github.com>
Co-authored-by: Eric G. Kratz <kratman@users.noreply.github.com>
Co-authored-by: Robert Timms <43040151+rtimms@users.noreply.github.com>
Co-authored-by: Saransh-cpp <Saransh-cpp@users.noreply.github.com>
js1tr3 pushed a commit to js1tr3/PyBaMM that referenced this issue Aug 12, 2024
@agriyakhetarpal @js1tr3
Fix doctests failures in scheduled tests (pybamm-team#3784)
b9ebb59 
Closes pybamm-team#3781
js1tr3 pushed a commit to js1tr3/PyBaMM that referenced this issue Aug 12, 2024
@valentinsulzer @brosaplanella
@Saransh-cpp @martinjrobins @agriyakhetarpal @kratman @rtimms @js1tr3
add temperature dependence to MSMR model (pybamm-team#3832)
4b564de 
* Bump to v23.9rc0

* Merge pull request pybamm-team#3412 from agriyakhetarpal/drop-i686-manylinux2014-support

Drop support for i686 manylinux

* Merge pull request pybamm-team#3413 from Saransh-cpp/improve-release-workflow

Improve release workflow, add a note, bump version manually

* Merge pull request pybamm-team#3436 from Saransh-cpp/fortnightly-wheels

Build wheels on the 1st and 15th of every month

* Merge pull request pybamm-team#3445 from pybamm-team/issue-3428-rename-exchange

pybamm-team#3428 exchange-current density error

* Merge pull request pybamm-team#3449 from pybamm-team/i3431-windows-wheels

Fix failing windows wheel builds

* Merge pull request pybamm-team#3456 from abillscmu/issue-3224-initial_soc

make initial soc work with half cell models

* Merge pull request pybamm-team#3467 from abillscmu/bugfix/initial_soh

* Merge pull request pybamm-team#3423 from jsbrittain/jax_gpu

JaxSolver fails when using GPU support with no input parameters

* Fix changelog

* Merge pull request pybamm-team#3475 from arjxn-py/fix-default-imports

Resolve default imports for optional dependencies

* Bump - `v23.9rc1`

* Fix date in CHANGELOG

* Bump version to v23.9

* Fix docs about Jax solver compatibility with Python versions (pybamm-team#3702)

* Ensure correct Python versions for Jax solver compatibility

* Simplify array of Python versions

Co-authored-by: Eric G. Kratz <kratman@users.noreply.github.com>

* Use different conjunction

Co-authored-by: Eric G. Kratz <kratman@users.noreply.github.com>

---------

Co-authored-by: Eric G. Kratz <kratman@users.noreply.github.com>

* Merge pull request pybamm-team#3706 from agriyakhetarpal/fix-pybamm-install-odes

Make `pybamm_install_odes` a bit more robust

* pybamm-team#3690 fix issue with skipped steps (pybamm-team#3708)

* pybamm-team#3690 fix issue with skipped steps

* pybamm-team#3690 changelog

* pybamm-team#3690 add test

* pybamm-team#3611 use actual cell volume for average total heating (pybamm-team#3707)

* pybamm-team#3611 use actual cell volume for average total heating

* pybamm-team#3611 changelog

* pybamm-team#3611 account for number of electrode pairs

* pybamm-team#3611 update variable names

* Improve the release workflow (pybamm-team#3737)

* Try fixing the release workflow

* Turn off safety

* Fix CHANGELOG

* Add OS

* Use regex for better matches

* Update instructions, add safety checks

* checkout to the version branch for the final release

* Bump to v24.1rc1

* pybamm-team#3630 fix interpolant shape error (pybamm-team#3761)

* pybamm-team#3630 fix interpolant shape error

* pybamm-team#3630 changelog

* Bump to v24.1rc2

* Bump to v24.1

* Fix doctests failures in scheduled tests (pybamm-team#3784)

Closes pybamm-team#3781

* Resolve broken `scikits.odes` installation on self-hosted M-series runner (pybamm-team#3785)

* Try fixing M-series runner tests

This is being done by adding SuiteSparse and SUNDIALS installations which might have been missing on the runner, which broke `scikits.odes`.

* Don't use Homebrew SUNDIALS, use LD_LIBRARY_PATH

* Don't use Homebrew to install SUNDIALS

* Force remove pip cache for `scikits.odes`

---------

Co-authored-by: Eric G. Kratz <kratman@users.noreply.github.com>

* add temperature dependence to MSMR model

* changelog

* fix tests

* fix example

* rob comments

* update notebook

---------

Co-authored-by: Ferran Brosa Planella <Ferran.Brosa-Planella@warwick.ac.uk>
Co-authored-by: Saransh Chopra <saransh0701@gmail.com>
Co-authored-by: Martin Robinson <martinjrobins@gmail.com>
Co-authored-by: Agriya Khetarpal <74401230+agriyakhetarpal@users.noreply.github.com>
Co-authored-by: Eric G. Kratz <kratman@users.noreply.github.com>
Co-authored-by: Robert Timms <43040151+rtimms@users.noreply.github.com>
Co-authored-by: Saransh-cpp <Saransh-cpp@users.noreply.github.com>
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Fix doctests failures in scheduled tests pybamm-team/PyBaMM
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