Updating from gwastro #16
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* Changes in pycbc_injection_minifollowup * 2nd change * 3rd change Co-authored-by: Marion Pillas Boissonnet <marionpillasboissonnet@client-172-18-72-200.clients.u-psud.fr>
* LOWER FREQUENCY CAN CHANGE!!!! * Need to update chisq as well * WS * Avoid duplication * Fix * Another fix * Update bank.py
* plot_singles_timefreq: improve caption, correct behavior of --center-time and clean code * plot_qscan: add title with channel name and clean code * Fissa un insetto * Whitespace * Silence warning * Plot chirp in every panel * Describe chirp in caption * Show channel name in caption
* coinc_mergetrigs: deduplicate livetime segments * Fissa insetti * Add comments Co-authored-by: Tito Dal Canton <tito.dalcanton@ijclab.in2p3.fr>
…larizations (#3486) * modified antenna pattern function definition * incorporated polarization types Tensor, Vector and Scalar * changed a letter * making changes acc. to code climate * remove whitespaces in blank lines * tab space * Update detector.py Co-authored-by: srashti <srashti.goyal@icts.res.in> Co-authored-by: Alex Nitz <alex.nitz@gmail.com>
* update retention levels for opt_snr jobs in parallelised cases
* update for gwtc-2 catalog * Update catalog.py
… results page when it updates (#3498) * easier to make workflow * add pycbc inference monitor script * Update pycbc_inference_monitor * fixes
* try adding a few second timeout * update timeout * increase timeout to the max * always print error * test * try retrying * use more broadly * cc * Update test_coinc_search_workflow.sh * fix pegasus version for travis
* fix bug for mean mchirp m_tot in coinc inspiral table, update IFO info to use triggered IFOs
the issue reported in numpy/numpy#16660 was fixed in numpy/numpy#16666 and released as part of numpy 1.19.1, so pycbc should now be able to use those newer versions, and just avoid 1.19.0
* rethink caching * fix indent
* Improvements to pycbc_plot_vt_ratio * Fix * Gareth's comments
* Create python-package.yml * Update python-package.yml * Update python-package.yml * Update python-package.yml * Update python-package.yml * Update python-package.yml * Update python-package.yml * Update python-package.yml * Update python-package.yml * Update python-package.yml * Update python-package.yml * Update python-package.yml * Update python-package.yml * Update python-package.yml
* Updated the header to include the greek letter chi * Changed both the header and caption to include the greek letter 'chi' with a squared
* rename tests * update * try to be parallel * test * simp * test * ws * test * more parallel * update labels
* Added SPAtmplt approximant in _get_imr_duration function * Added SPAtmplt approximant in _get_imr_duration function * Corrected minor whitespaces and lenght issues * Fixing codeclimate issues * Codeclimate
* add generator for separate modes * address Ian's comments * remove misleading header title * more doc fixes
* silence warnings from child nodes in MPI * remove redundant line
* Put all the plotting codes in plotting * Move hdfcoinc to all_sky_search
* re-enable pycbc live test * try to store docs as artifact * only store artifact on python 38 * fixes * fix * update * test * fix * update * test * test * test * add deploy action * test * t1 * test * test * test * pypi upload * test * test * test * now that deploy seems to work, only do so on master * require tests to pass to deploy * ws * gh pages options * keep same old names * test * test * test * try this too * do this * fix * ok, finished
* Remove all old coinc codes * Renaming multiifo files * Move combine_statmap + delete old code * Readd mistakenly deleted file * Readding another one * Remove ability to write legacy output in coinc_findtrigs
* fix reproducible noise bug * add unit test to check that overlapping time series are the same * update expected noise sum values * Update injection SNR to have wider tolerance
* initial commit * fixes + logging * fixes * cc * add validation script for test posterior * bounds have to be done manually * plot mod * Update analytic.py
* simplify burn in logic to avoid accidently calculating effective samples when not burned in * always calculate acls in checkpoint method
* Initialize inj merge hdf executable * Add error handling and small fixes to merge inj * Remove use of from_cli
* try building wheels * Update basic-tests.yml * Update basic-tests.yml * Update basic-tests.yml * Update basic-tests.yml * update * upload artefact to wheel * move pypi to separate workflow * test * fix * fix * check * test * try this * try cibuildwheel * test * test * test * test * fix
* fix use of descr with metadata * unpin h5py * fixes * this too
* First pass * fix * fix * dqsegdb names * Maybe this way is better * Required subclass of MultiDetOptionAction * fix * Make it consistent with original MultiDetOptionAction behavior * Need to specify veto definer too * Ian's comment
* try to make relative model independent of detector * run black, various fixes * cc * woops
…l on github (#3638) * fetch full git history so version is set correctly * formatting
* add from file injection handler class * fix bugs, make api standard * allow inject to happen in place in time series * use time series inject method * add conditioning to fromfile and allow frame files to be read * code climate * fix err handling for py2.7 * change name to incoherent_from_file * fix whitespace
* add pytest conifg and make test array compatible * make fs compatible with pytest * make time series compatible with pytest * fix waveform utils test * make skymax test work with pytest * fix schemes * coinc stat test fix * fix frame test for pytest * make fft test compatible with pytest * waveform tests update * can only do one fftw backend test (global state issue) * add tox configuraton file * update tox and use in test suite * update * fix * fix * this? * udpate deps * add a few more waveforms to test * check more approximants in waveform test * check more approximants in waveform test * OK, this is run twice in frame * Update test_skymax.py
…ection (#3639) * add option to plot closest in time injection values * typo * fixes
* do not hard require old emcee version * require lalsuite
* add basic mac test * turns out seob did need extra files, darn * check * debug * more debug * test * huh * remove debug statements
* Add script to estimate source probabilities from trigger files * Change import section * Address comments on parser section * Change logging and makedir * Add explanation of sngl_snr[ifo] * Fixing duplicate naming error * Add --include-mass-gap option * Address comment on outfile naming * Changes due to use pycbc.makedir * Add more help to --search-tag
* add option to set final taper size for pre-merger waveform * fix
* update random install docs, merge description * update manifest * fix links * update manifest * remove links to azure
* unpin numpy version * test * always recreate tox env * wrong way around * nvm * use minimum numpy version when building wheel * also add catchall * future is unpinned * fix typo
* add ability to set fd sequence with plugin * fix * space
* silence ragged warnings * fix
* add p39 to testing * include python 39 in more places
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