Promote To BETA #518
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Promote To BETA #518
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- Validate attribute values in JSON deserialization - Fix typo
Use path for ExtFile deserialization in order to honor the inner folders
* Pivotal ID # 172671360: Ignore Empty Value Attributes - Validate empty values for attributes and attribute details in JSON deserialization - Filter out attributes and attribute details with empty values - Remove alias to improve code readability - Update schema to avoid null attribute values on the database - Remove unused code
…point (#320) Pivotal ID # 176377544: Add refresh users directory structure api endpoint Pivotal ID # 176018722: Add BioStudies client examples for external users
* added mongo support
* Pivotal-176168841: Allow to check inactive user registration https://www.pivotaltracker.com/story/show/176168841
…#321) * Pivotal ID # 176377632: File list extension is missing in BIA studies - Include the file list extension in the serialization according to the format - Include the submission folder as a source for the submission files - Remove unnecessary notification properties from the web app configuration file
* added submission serializer
* added mongo itest support
* Pivotal ID # 172671360: Warn users about upcoming public release - Log an error instead of failing when getting extended submissions - Fix notification messages
…mission is deleted https://www.pivotaltracker.com/story/show/176670057 - added logic to update modification date on the deletion
* - added interfaces for draft logic extraction * code review changes
* added project and basic submission query support
* - added access tag query support * code review changes
- added draft functionality - added projects queries
* Pivotal ID # 176779952: Mongo iTests CI - Use a Gradle property to decide whether to run the tests in Mongo or MySQL - Run both types of integration tests in the CI - Load the schema for the MySQL database container from a proper SQL script - Remove unused database column
* Pivotal ID # 175163839: Mongo Submission Stats - Implementation of the service to persist and update submission stats in Mongo - Scripts to generate a Mongo docker container for BioStudies - Add missing properties to the Submission Web App configuration - Add missing properties to the local instance configuration - Remove unnecessary step in the builder configuration - Remove unused property
* Pivotal ID # 176886357: Async Submission Request - Store files full path in Mongo documents - Adjust the files service in order to process submission files recursively and update them with the proper path - Change processing order from temp to final folder - Simplify FileService class Co-authored-by: Juan Camilo Rada Mesa <jcamilorada@ebi.ac.uk>
* Pivotal ID #177074116 : model table section properly https://www.pivotaltracker.com/story/show/177074116
* Pivotal #ID: Rename PMC mongo collections https://www.pivotaltracker.com/story/show/176838189
Fix submission deletion for mongo
* Pivotal ID # 176886824: Improve API Docs
* Pivotal ID #176679139: Ext Submission File List Refactor https://www.pivotaltracker.com/story/show/176679139
* Pivotal ID # 177042374: Delete Draft After Submission - Use interface in the resource in order to get the proper instance based on the persistence type - Remove any existing temporary draft after the submission is created - Create an endpoint to perform submissions from drafts instead of submitting page tab - Set the draft key in the submission process in order to be able to delete it once the submission is processed
… refresh (#506) * Add push to partial updates exchange on study refresh * Fix build-test CI step failed Co-authored-by: Liviu Anita <liviu@ebi.ac.uk>
- Refactor the submission releaser app to use database instead of extended submission - Add an endpoint to allow releasing submissions - Update Java home for scheduled jobs
Remove the property to persist on either Mongo or MySql since it's no longer required
…ding option (#509) Add an option to the extended submission endpoint to decide whether or not the file list referenced files should be loaded Co-authored-by: Jhoan Munoz <jhoanmanuelms@gmail.com>
#492) - Added null support for XML - Remove unused code - Improve coding formatting Co-authored-by: Jhoan Munoz <jhoanmanuelms@gmail.com>
Add support for empty values in detail attributes
* Pivotal ID # 180640412: PMC Links Exporter - Add a method in the exporter task in order to access and export the PMC data - Create the task to publish the PMC links in the FTP directory - Update Java home for the scheduler apps
* Pivotal ID # 181330654: File List Empty Path Entries Make the path required for file entries in page tab
* Pivotal ID # 180640412: PMC Links Exporter - Fix exporter jobs logging - Create JSON writer only when necessary - Improve the exporter jobs scheduling - Update properties
…ns (#516) If any active re-submission request exists, the currently processed submission shouldn't be displayed in the submission list
Move releaser execution to 1 AM
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Promote changes to BETA