Whole Exome Sequencing end-to-end pipeline. Starting from whole exome fastq files: Data QC, Adapter Trimming, Reference Genome Alignment, SAM/BAM Validation, Data Recalibration and Variant Calling.
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Apr 2, 2022 - HTML
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trimmomatic
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Bulk Rna-seq Analysis
r tcga gene-expression r-markdown bash-script rna-seq-analysis bwa fastqc gdc-portal trimmomatic getx deseq2-analysis featurescount
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Nov 14, 2024 - HTML
A comprehensive workflow for de novo assembly of whole-genome shotgun sequencing data using Velvet, followed by BLAST searches to analyze assembled contigs.
bioinformatics genomics sequencer ngs bioinformatics-pipeline blast next wgs whole-genome-sequencing denovo-assembly contigs ngs-analysis ngs-pipeline bioinformatics-tool blastp genomics-data trimmomatic velvet-assembler
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Nov 26, 2023 - HTML
RNA-seq code with Bowtie alignment and generating strain-specific counts using Emase
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Apr 4, 2022 - HTML
The repository contain directories of projects done during the bioinformatics degree program
bioinformatics gatk bioinformatics-pipeline data-analysis multiqc samtools vcftools bowtie2 fastqc trimmomatic smith-waterman-algorithm
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Nov 25, 2022 - HTML
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