H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)
The AnnSQL package enables SQL based queries on AnnData objects.
Genome Contact Map Explorer - gcMapExplorer. Visit:
Cartography of Genomic Interactions Enables Deep Analysis of Single-Cell Expression Data (Nature Communications, 2023)
Differential Privacy Protection against MembershipInference Attack on Machine Learning for Genomic Data
[G]enomic [P]ositioning with [Py]thon
JAMIRA is a reproducible Workflow for Integrative Exploration of Genomic Features of prokariotes
PCA on Genotypes
🌳 Human ancestry inference from genomic data
Python library to query and transform genomic data from indexed files
FIREcaller: Python library for detecting Frequently Interacting REgions (FIREs) from Hi-C data
Final Year Project Repository for correlating the personality trait with the diseases
Script to cluster Paired End Tags (PETs) from chromatin conformation capture (3C) experiments
A utility for splitting mixed origin NGS reads with secondary or alt mappings
Scripts created at CSU as a PhD student for genomic annotations and comparisons.
an open-source (GPLv3) standalone Python package to analyze optical mapping data, with de novo repeat motif detection and analysis capabilities
This repository houses the Genomic Sequence Comparison Code (GSCC), a collection of Python scripts designed for genomic sequence analysis. Whether you're comparing suspected sequences with known reference sequences or delving into bioinformatics, GSCC provides versatile tools for pairwise alignment. Feel free to explore!
The GSuite HyperBrowser - the new version of the Genomic HyperBrowser, currently forked from Galaxy v16.01
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