pathogen agnostic general workflow for genome assembly of Illumina paired-end sequence data
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Updated
Oct 11, 2024 - Nextflow
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bacterial-genomics
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python PhyloGenomic, Core and Fingerprint analyses software
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Updated
May 14, 2024 - Python
D2AFRICA bioinformatics tutorial
training
bioinformatics
freecodecamp
training-materials
bioinformatics-analysis
bioinformatics-tool
bacterial-genomics
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Updated
May 27, 2024
This repository contains scripts used to collect and analyze data from whole genome sequences of clinical Streptococcus agalactiae (Group B Strep) isolates for the project described in the following manuscript: Pell, M.E. et al., bioRxiv, 2024-04-01.
variant-calling
whole-genome-sequencing
antibiotic-resistance
virulence-genes
streptococcus-agalactiae
bacterial-genomics
pangenome-analysis
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Jun 17, 2024 - R
normalizing metagenomics abundances based on OTU abundances.
bioinformatics
metagenomics
genome-analysis
metagenomes
bacterial
bacterial-genomes
bacterial-genomics
metagenomics-count
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Aug 21, 2024 - Python
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