Skip to content
#

core-genome

Star

Here are 7 public repositories matching this topic...

Language: All
Filter by language
All 7 Python 4 HTML 1 Jupyter Notebook 1 Perl 1

vinuesa / get_phylomarkers

Star 53

A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concatenation approaches

bash r pipeline genomics perl phylogenetic-trees phylogenetics markers orthologues microbiology population-genetics codon-alignment maximum-likelihood phylogenomics species-trees recombination core-genome species-delimitation phylogenomics-pipeline clock-hypothesis
  • Updated Aug 7, 2024
  • Perl

JJChenCharly / OrthoSLC

Star 5

OrthoSLC: A pipeline to get Orthologous Genes using Reciprocal Best Blast Hit (RBBH) Single Linkage Clustering, indenpendent of relational database management system

lightweight bioinformatics genomics jupyter-notebook large-scale single-linkage-clustering large-dataset pan-genome core-genome dereplication pre-compiled reciprocal-blast-hits microbe-subspecies independent-of-mysql cpp-callable-binary convenient-installation
  • Updated Oct 21, 2024
  • Jupyter Notebook

Improve this page

Add a description, image, and links to the core-genome topic page so that developers can more easily learn about it.

Curate this topic

Add this topic to your repo

To associate your repository with the core-genome topic, visit your repo's landing page and select "manage topics."

Learn more