20.2 (Long Term Support)
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20.2.8
Release notes
Bug-fix release in the 20.2.x LTS series.
We anticipate this being the final release in the 20.2.x LTS series.
Changes
This release includes a number of fixes that have accumulated in niworkflows,
including the following fixes that affect fMRIPrep:
3dQwarpto maximum 4 CPUs for stability reasons sdcflows#128)directories (FIX: Use copy function that does not preserve atime when creating fsaverage directories niworkflows#703)
Full Changelog: 20.2.7...20.2.8
20.2.7
Release Notes
Bug-fix release in the 20.2.x LTS series.
Changes
-basescale 1parameter to avoidflirtscaling (FIX: Add-basescale 1parameter to avoidflirtscaling #2624)--bids-filter-file\s into Docker container (WRAPPER: Map--bids-filter-files into Docker container #2691)Full Changelog: 20.2.6...20.2.7
20.2.6
Release Notes
Patch release in the 20.2.x LTS series.
This release includes an updated runtime environment for Docker/Singularity users.
This environment includes a newer release of
indexed_gzip, fixingCrcErrors previously encountered.Changes
Full Changelog: 20.2.5...20.2.6
20.2.5
Release Notes
Bug-fix release in the 20.2.x LTS series.
This release includes a fix to
--slice-time-refparsing. Also, some issues in anatomical processing are resolved, including poorly-interpolated labels in aseg segmentations, and probabilistic segmentations have reverted to FAST.Changes
Full Changelog: 20.2.4...20.2.5
20.2.4
Release Notes
Bug-fix release in the 20.2.x LTS series.
This release includes some fixes to minor bugs, and includes enhancements to allow the user to specify a different slice-timing-correction (STC) target.
Each BOLD series will contain
SliceTimingCorrectedmetadata to indicate whether STC was performed. If performed, theStartTimemetadata field will be set to indicate the onset time of the BOLD series.Changes
BIDSLayoutIndexerand do not index unnecessary modalities (ENH: UseBIDSLayoutIndexerand do not index unnecessary modalities #2494)Full Changelog: 20.2.3...20.2.4
20.2.3
Release Notes
Patch release in the 20.2.x LTS series.
Addresses minimal problems in some edge-cases, overall improves the documentation and infrastructure.
Exercises some maintenance operations addressing problems surfaced when the previous tag 20.2.2 was released.
CHANGES
DerivativesDataSinknondeterministic checksums fixed withniworkflows=~1.3.4(FIX:DerivativesDataSinknondeterministic checksums fixed withniworkflows=~1.3.4#2458)sentry_sdk, which is not a dependency (FIX: Unprotected import ofsentry_sdk, which is not a dependency #2460)res-2entity does not mean 2mm (DOC: Clarify thatres-2entity does not mean 2mm #2466)/root/.npm(MNT: Remove /root/.npm #2464)Full Changelog: 20.2.2...20.2.3
20.2.2
Release Notes
Hot-fix release in the 20.2.x LTS series.
Addressing a bug on fMRIPrep's resampling to standard spaces (#2444).
In addition, some other relevant bug fixes and performance improvements are built into this patch.
CHANGES
BrokenProcessPoolfailures (FIX: Add some clarity to BrokenProcessPool failures #2436)--bids-filter-fileshould raise on error (FIX: non-existing path or JSON syntax error for--bids-filter-fileshould raise on error. #2331)--ignore sbrefis passed (FIX: Ignore SBREF files if --ignore sbref is passed #2370)_get_series_lenperformance ([ENH] Improve_get_series_lenperformance #2406)nilearn==0.6.2(PIN: nilearn 0.6.2 #2427)tedana==0.0.9a1for LTS branch (PIN: tedana 0.0.9a1 for LTS branch #2403)Full Changelog: 20.2.1...20.2.2
20.2.1
Release Notes
Bug-fix release in the 20.2.x LTS series.
This release adds missing metadata to GIFTI and CIFTI-2 derivatives and fixes a logging bug affecting a small number of datasets.
Additionally the
--output-layout bidsflag will now output fMRIPrep derivatives directly into the output directory, nesting FreeSurfer derivatives by default in<output>/sourcedata/freesurfer. This layout allows the output root to be a valid BIDS Derivatives dataset, simplifying data management and provenance tracking with content tracking tools, such as DataLad. This layout will likely become the default in future release series.Changes
Full Changelog: 20.2.0...20.2.1
20.2.0
Release Notes
With this third minor release series of 2020, the first fMRIPrep LTS (long-term support) is finally here!
This release contains a number of bug-fixes and enhancements mostly related to easing the maintenance, anticipating patch-release breaking changes to ensure a longstanding LTS, and addressing some run-to-run repeatability problems of the CompCor implementation.
fMRIPrep 20.2 LTS introduces the long-term support program. This LTS version will be kindly steered and maintained by the group of Dr. Basile Pinsard and Prof. Pierre Bellec at CRIUGM, (Université de Montréal). The LTS is planned for a window of 4 years of support (i.e., until September 2024).
As with all minor version increments, working directories from previous versions should not be reused.
Thank you for using fMRIPrep! If you encounter any issues with this release, please let us know by posting an issue on our GitHub page!
CHANGES
antsBrainExtraction, better handling edge cases niworkflows#567)probsegfile from MNI152NLin2009cAsym (FIX: Get missingprobsegfile from MNI152NLin2009cAsym #2271)--ignore t2w/flairoptions (FIX: Restore --ignore t2w/flair options #2260)--anat-derivativesis provided. (FIX: skip t1w check if anat-derivatives provided. #2201)--bids-filterswithin config file (FIX: Storing--bids-filterswithin config file #2177)--debug compcoris passed (ENH: Output compcor masks if--debug compcoris passed #2248)database_path(ENH: Leverage BIDSLayout's database_path #2203)--no-ttyoption tofmriprep-docker.py(ENH: Add --no-tty option to fmriprep-docker.py #2204)Dockerfile(9512086)setup.cfg(flake8 and pytest) (MAINT: Updatesetup.cfg(flake8 and pytest) #2183)Beta Was this translation helpful? Give feedback.
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