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@nipreps

NeuroImaging PREProcessing toolS

NiPreps (NeuroImaging PREProcessing toolS)

Please visit www.nipreps.org for a more comprehensive description of this community. Don't forget to also learn about the sister initiative www.templateflow.org.

News and some discussions take place at the Nipreps GitHub discussions.

About

The current neuroimaging workflow has matured into a large chain of processing and analysis steps involving a large number of experts, across imaging modalities and applications. The development and fast adoption of fMRIPrep have revealed that neuroscientists need tools that simplify their research workflow, provide visual reports and checkpoints, and engender trust in the tool itself. The NiPreps framework extends fMRIPrep's approach and principles to new imaging modalities. The vision for NiPreps is to provide end-users (i.e., researchers) with applications that allow them to perform quality control smoothly and to prepare their data for modeling and statistical analysis.

Acknowledgments

This work is steered and maintained by the NiPreps Community. The development of this framework is supported the NIMH (RF1MH121867, RAP, OE).

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  1. fmriprep Public

    fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

    HTML 666 301

  2. dmriprep Public

    dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

    Python 67 25

  3. smriprep Public

    Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)

    Python 140 41

  4. mriqc Public

    Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain

    Python 316 134

Repositories

Showing 10 of 54 repositories
  • fmripost-template Public template

    A generic fMRIPost workflow

    Python 0 Apache-2.0 1 5 1 Updated Apr 23, 2025
  • fmripost-aroma Public

    Run ICA-AROMA on fMRIPrep derivatives

    Python 11 Apache-2.0 2 19 2 Updated Apr 22, 2025
  • fmriprep_stats Public

    Automatic reports summarizing usage stats from Sentry.io

    Jupyter Notebook 4 1 0 1 Updated Apr 21, 2025
  • .github Public

    Shared community health files

    2 CC0-1.0 2 0 0 Updated Apr 16, 2025
  • mriqc Public

    Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain

    Python 316 Apache-2.0 134 67 (10 issues need help) 3 Updated Apr 15, 2025
  • nibabies Public

    fMRIPrep Lifespan - A robust, transparent workflow tailored for neonate and infant MRI

    Python 30 Apache-2.0 12 37 2 Updated Apr 10, 2025
  • fmripost-rapidtide Public

    A BIDS App for running rapidtide on a preprocessed fMRI dataset.

    Python 2 Apache-2.0 1 12 1 Updated Apr 6, 2025
  • fmripost-phase Public

    An attempt at an fMRIPost workflow for handling phase data

    Python 3 Apache-2.0 1 10 0 Updated Apr 3, 2025
  • nifreeze Public

    A flexible framework for volume-wise artifact estimation and correction across multiple neuroimaging modalities (diffusion MRI, functional MRI, and PET)

    Python 2 Apache-2.0 3 18 15 Updated Mar 29, 2025
  • sdcflows Public

    Susceptibility Distortion Correction (SDC) workflows for EPI MR schemes

    Python 35 Apache-2.0 28 32 (1 issue needs help) 6 Updated Mar 26, 2025