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589 Open 856 Closed
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Issues list

System should report an error if we have one or more monomers on the canvas don't have mapping for them in case of export to Sequence/FASTA Bug FASTA Bucket: FASTA related issues Priority: Medium Sequence mode Bucket: Sequence mode related issues
#2436 opened Sep 27, 2024 by AlexeyGirin Indigo-1.25.0-rc.1
Export of variant monomers to Sequence/FASTA doesn't work for mixed ambiguous monomers Bug FASTA Bucket: FASTA related issues Priority: High Sequence mode Bucket: Sequence mode related issues
#2435 opened Sep 27, 2024 by AlexeyGirin Indigo-1.24.0-rc.5
Preview: Issues with Saving and Opening Structures with Multi-Tailed Arrow in CDX and CDXML Formats Bug Cascade reactions Export to CDX Bucket: Bugs related to Export to CDX Export to CDXML Bucket: Bugs related to Export to CDXML MMPK Scope for Pathway reactions, View-only mode, Static images, Custom buttons and Ketcher API changes Priority: High
#2433 opened Sep 26, 2024 by Zhirnoff Indigo-1.25.0-rc.1
Molecule with 0 coordinates in MOL V2000 is displayed incorrectly on Canvas after loading Bug Export to RXN Bucket: Export to RXN related issues Priority: Low Reactions
#2432 opened Sep 26, 2024 by ivanmaslow Indigo-1.25.0-rc.1
"Convert error! metalayout: average bond length is too small" error appears when loading from RDF and RXN V2000/V3000 reactions with molecules with 0 coordinates Bug Export to RXN Bucket: Export to RXN related issues Priority: Low Reactions
#2431 opened Sep 26, 2024 by ivanmaslow Indigo-1.25.0-rc.1
Import of unresolved monomers from HELM doesn't work Bug HELM Bucket: Bugs related to Export to HELM format Priority: Medium
#2427 opened Sep 25, 2024 by AlexeyGirin Indigo-1.25.0-rc.1
Preview: Reactions are saved with the incorrect quantity of reactants if the continuation of several tails is matched to one reactant Bug Cascade reactions MMPK Scope for Pathway reactions, View-only mode, Static images, Custom buttons and Ketcher API changes Priority: High
#2426 opened Sep 25, 2024 by ivanmaslow Indigo-1.25.0-rc.1
O and U sumbols are not supported in sequence mode Bug Ljubica found bugs Bucket: Bugs found by Ljubica on her daily routine Priority: High Sequence mode Bucket: Sequence mode related issues
#2425 opened Sep 24, 2024 by AlexeyGirin Indigo-1.25.0-rc.1
Preview: Layout action works not correctly when Multi-Tailed Arrow is on canvas without elements near tails or head, If no elements are near multi-tailed arrow, layout action should consider it as empty elements Bug Cascade reactions Layout MMPK Scope for Pathway reactions, View-only mode, Static images, Custom buttons and Ketcher API changes Priority: High
#2424 opened Sep 24, 2024 by ivanmaslow Indigo-1.25.0-rc.1
@even1024
Preview: Indigo functions doesn't work prorerly: Aromatize, Dearomatize, Layout, Clean Up, Hydrogens, Auto-Mapping Tool Bug Cascade reactions MMPK Scope for Pathway reactions, View-only mode, Static images, Custom buttons and Ketcher API changes Priority: High
#2422 opened Sep 24, 2024 by ivanmaslow Indigo-1.25.0-rc.1
@even1024
The layout is incorrect with retrosynthetic arrow Bug Priority: High
#2417 opened Sep 23, 2024 by AnnaKosol Indigo-1.24.0-rc.5
@AliaksandrDziarkach
Preview: Intermediate reaction products can't be recognized on Save to RDF if there are more than one product Bug Cascade reactions MMPK Scope for Pathway reactions, View-only mode, Static images, Custom buttons and Ketcher API changes Priority: Medium
#2416 opened Sep 20, 2024 by ivanmaslow Indigo-1.25.0-rc.1
Preview: Single arrow isn't displayed after loading from RDF reaction without reactants (0:1, 0:2...) Bug Cascade reactions MMPK Scope for Pathway reactions, View-only mode, Static images, Custom buttons and Ketcher API changes Priority: Low
#2414 opened Sep 20, 2024 by ivanmaslow Indigo-1.25.0-rc.1
@even1024
Preview: User can't correctly save to RDF/RXN reaction with several products Bug Cascade reactions MMPK Scope for Pathway reactions, View-only mode, Static images, Custom buttons and Ketcher API changes Priority: High
#2412 opened Sep 20, 2024 by ivanmaslow Indigo-1.25.0-rc.1
@even1024
Preview: "Unordered_map::at: key not found" error is displayed after adding of specific reactions from the RDF file Bug Cascade reactions MMPK Scope for Pathway reactions, View-only mode, Static images, Custom buttons and Ketcher API changes Priority: High
#2411 opened Sep 20, 2024 by ivanmaslow Indigo-1.25.0-rc.1
@even1024
The primary attachment point isn't displayed after exporting from CDXML (CDX, base64) Bug Priority: Medium
#2410 opened Sep 19, 2024 by AnnaKosol Indigo-1.25.0-rc.1
The reaction with reverse retrosynthetic arrow is displayed not correct after clicking on Aromatize, Dearomatize, Calculate CIP, Add explicit hydrogens Bug Priority: Medium
#2409 opened Sep 19, 2024 by AnnaKosol
Preview: UI issues with displaying of chemical elements with abbreviation after loading from RDF Bug Cascade reactions MMPK Scope for Pathway reactions, View-only mode, Static images, Custom buttons and Ketcher API changes Priority: Medium
#2408 opened Sep 19, 2024 by ivanmaslow Indigo-1.25.0-rc.1
@even1024
Preview: The ordering of branches of cascade reactions and reactions themselves should be the same on Load/Save from/to RDF Bug Cascade reactions MMPK Scope for Pathway reactions, View-only mode, Static images, Custom buttons and Ketcher API changes Priority: High
#2407 opened Sep 19, 2024 by ivanmaslow Indigo-1.25.0-rc.1
@even1024
Preview: If the root reaction has similar reactants, a cascade reaction is built only to the first reactant and creates an additional reaction for the second reactant Bug Cascade reactions MMPK Scope for Pathway reactions, View-only mode, Static images, Custom buttons and Ketcher API changes Priority: Medium
#2406 opened Sep 19, 2024 by ivanmaslow Indigo-1.25.0-rc.1
@even1024
Save reactions with a text above and below reaction arrows to RDF MMPK Scope for Pathway reactions, View-only mode, Static images, Custom buttons and Ketcher API changes
#2404 opened Sep 18, 2024 by yauhen-karmyzau
@even1024
Elliptical arrows become horizontal after layout Bug Layout Priority: Medium
#2403 opened Sep 18, 2024 by AnnaKosol Indigo-1.25.0-rc.1
Display and Layout RTF from Metadata Fields in RDF MMPK Scope for Pathway reactions, View-only mode, Static images, Custom buttons and Ketcher API changes
#2401 opened Sep 18, 2024 by yauhen-karmyzau
@even1024
Enhance Indigo to Support RTF Metadata Reading and Conversion in RDF Files MMPK Scope for Pathway reactions, View-only mode, Static images, Custom buttons and Ketcher API changes
#2397 opened Sep 17, 2024 by yauhen-karmyzau
@even1024
Elements lose layer information when exporting CDX/CDXML files from Ketcher into ChemDraw Bug CDX-ChemDraw Bucket: Save/View/Open of CDX forrmat related issues Export to CDX Bucket: Bugs related to Export to CDX Export to CDXML Bucket: Bugs related to Export to CDXML MMPK Scope for Pathway reactions, View-only mode, Static images, Custom buttons and Ketcher API changes Priority: Medium
#2390 opened Sep 16, 2024 by Zhirnoff Indigo-1.25.0-rc.1
ProTip! Follow long discussions with comments:>50.