v5.3.11

✨ Enhancements

• Feature/ch/10184 support patient filters sent via postdata @haynescd (#4635)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.3.10...v5.3.11
• Frontend: v5.3.10...v5.3.11

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.3.10

✨ Enhancements

• Hide reVUE when there is no reVUE mutations in the query @leexgh (#4637)
• Study view KM plot: Updating tooltip and increasing threshold for compact mode @dippindots (#4636)

🐛 Bug Fixes

• Fix add chart button so that it never overlaps tabs @alisman (#4627)

👷‍♀️ Testing, Configuration & Deployment

• Fix localdb @alisman (#4634)

🧰 Maintenance

• Remove redundant makeObservable call @aditygrg2 (#4633)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.3.9...v5.3.10
• Frontend: v5.3.9...v5.3.10

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.3.9

🐛 Bug Fixes

• Fix double click on gene query icon in study view @alisman (#4626)

🎨 Style Tweaks

• Adjust toast settings on studyview @alisman (#4628)

🧰 Maintenance

• ⚡ Update GenomeNexus Api sync @haynescd (#4618)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.3.8...v5.3.9
• Frontend: v5.3.8...v5.3.9

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.3.8

✨ Enhancements

• Add new "queue" gene icon to study view gene tables @alisman (#4617)
• ✨ Add PatientIdentifiers URL Parameter @haynescd (#4616)
• Add TCGA Pancan pathways to query selector @inodb (#4610)

🐛 Bug Fixes

• Fix profile filtering when adding Generic Entity IDs in Oncoprint @oplantalech @alisman (#4596)

👷‍♀️ Testing, Configuration & Deployment

• update screenshots after oncokb change @alisman (#4623)

🧰 Maintenance

• Update svg2pdf to fix broken Overlap charts download @dippindots (#4601)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.3.7...v5.3.8
• Frontend: v5.3.7...v5.3.8

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.3.7

🧬 Features

• Structural variants tab on results view (phase 1) @fuzhaoyuan (#4588)

✨ Enhancements

• 🔧 Add configurability for StudyDownloadUrl @haynescd (#4602)
• Filter Clinical Attribute Charts when priority is -1 @haynescd (#4598)
• Add a configurable legend to timeline tracks @alisman (#4593)

🐛 Bug Fixes

• Correct sample icon coloring on the patient view @gblaih (#4613)
• Fix broken civic links @onursumer (#4612)

👷‍♀️ Testing, Configuration & Deployment

• Disable keycloak caching for localdb tests @dippindots (#4615)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.3.6...v5.3.7
• Frontend: v5.3.6...v5.3.7

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.3.6

🧬 Features

• Add revue icon for revue variants @leexgh (#4589)

✨ Enhancements

• Download data from study view treatment tables @Player256 (#4595)
• 🔧 Add Configurable Param for max number of samples in study vi… @haynescd (#4587)

🐛 Bug Fixes

• Import image as source for revue logo @leexgh (#4606)
• Check undefined revue for mutation type and protein change column @leexgh (#4605)
• Check undefined annotation_summary when fetching revue @leexgh (#4604)

🏎 Performance Tweaks

• Study view km plot optimization @dippindots (#4520)

🎨 Style Tweaks

• Optimize Vue icon image @alisman (#4608)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.3.5...v5.3.6
• Frontend: v5.3.5...v5.3.6

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.3.5

🐛 Bug Fixes

• Filter SV by custom driver annotations in oncoprint and study page @BasLee (#4552)
• Fix oncokb card for intragenic gene in mutation table @alisman (#4594)
• 🐛 Add Missing Operations Button Txt to Clinical Event Type Table @haynescd (#4592)

🎨 Style Tweaks

• Tweak style of oncoprint controls @aditygrg2 (#4548)

🧰 Maintenance

• Update api clients @alisman (#4591)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.3.4...v5.3.5
• Frontend: v5.3.4...v5.3.5

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.3.4

🧬 Enhancements

• Impl. study search on Query Page using 'study tags' @BasLee (#4571)
• Improve Oncoprint Add-track UI @aditygrg2 (#4542)

🐛 Bug Fixes

• Hide defunct download tab on home page @gblaih (#4585)

🧰 Maintenance

• Update yarn lock file to fix build error @alisman (#4584)
• [Snyk] Security upgrade xml2js from 0.4.23 to 0.5.0 @oplantalech (#4578)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.3.3...v5.3.4
• Frontend: v5.3.3...v5.3.4

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.3.3

🧬 Features

• Disable autocommit and manually commit filters in study view @BasLee (#4502)

🐛 Bug Fixes

• Disable oncokb fetch from MutationMapper when show_oncokb config is off @alisman (#4572)

👷‍♀️ Testing, Configuration & Deployment

• Update circleci config to parametrize Workflow for e2e tests @haynescd (#4570)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.3.2...v5.3.3
• Frontend: v5.3.2...v5.3.3

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.3.2

🧬 Features

• Allow numeric data type for custom data charts @TJMKuijpers (#4533)

✨ Enhancements

• Update gene related search in Oncoprint and Plots tab @dippindots (#4517)
• Oql upstream downstream fusions in oncoprint @pvannierop (#4494)

🐛 Bug Fixes

• Apply oncokb configuration to patient page (where it was missing) @alisman (#4568)
• Fix showNA undefined for numerical data type @TJMKuijpers (#4562)

👷‍♀️ Testing, Configuration & Deployment

• Add screenshots and adjust waitForOncoprint @alisman (#4573)
• Fix localdb keycloak docker image issue @fuzhaoyuan (#4564)

🧰 Maintenance

• Update api clients and make associated changes @alisman (#4567)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.3.1...v5.3.2
• Frontend: v5.3.1...v5.3.2

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning