v5.2.3

🧬 Features

• Add pathways tab to group comparison view @YusufZiyaOzgul (#4372)

✨ Enhancements

• Add error alert type for non-catastrophic errors @alisman (#4428)
• Add abstract reference linkouts in OncoKB Card @calvinlu3 (#4464)
• Allow resistant mutations in the OncoKB track @onursumer (#4462)
• Format and fix gene selector and tab contents in group comparison lollipop plot @gblaih (#4444)
• Show both tooltips on hover when lollipop exists in both groups in comparison view lollipop @gblaih (#4458)
• Add driver annotation source selector and maintain track visibility in comparison view lollipop @gblaih (#4463)

🐛 Bug Fixes

• renaming "Log Ratio" to "Log2 Ratio" @alisman (#4386)

📘 Documentation

• Add README for oncokb-frontend-commons @scarrero4660 (#4465)
• Update upload data email @inodb (#4461)

👷‍♀️ Testing, Configuration & Deployment

• Update localdb tests @dippindots (#4472)

🧰 Maintenance

• Include stacktrace in loggly error tracking @alisman (#4471)
• Improve loggly tracking of oncokb errors @alisman (#4466 #4468)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.2.2...v5.2.3
• Frontend: v5.2.2...v5.2.3

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.2.2

✨ Enhancements

• Add driver/VUS categories for group comparison lollipop plot @gblaih (#4425)
• Cloodge to get lgggbm study overlap detection (other tcga studies are prefixed "lgg") @alisman (#4455)
• Use profiled patients count in axis labels and tooltips in comparison view lollipop @gblaih (#4454)
• Add functionality to show selected columns in mutations table on init @alisman (#4453)
• Enable log scale on plots tab for any clinical data type that is a positive number @haynescd (#4450)

🐛 Bug Fixes

• Fix axis label rounding issue in group comparison lollipop @gblaih (#4449)
• Update Patient View Mutations chart to force sequential mode when all samples do not have date data points @haynescd (#4434)

🧹 Cleanup & Refactoring 🔧

• Move OncoKB card and icons into separate package oncokb-frontend-commons @scarrero4660 (#4404)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.2.1...v5.2.2
• Frontend: v5.2.1...v5.2.2

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.2.1

🧬 Features

• Remove the feature flag from Group Comparison Mutations tab and add beta indicator @alisman (#4441)

✨ Enhancements

• Show mutation and sample count in frequency mode tooltip for group comparison lollipop plot @gblaih (#4440)
• Capture selected scale in URL in group comparison lollipop plot @gblaih (#4436)

🐛 Bug Fixes

• Default axis scale to frequency in group comparison lollipop plot @gblaih (#4442)

👷‍♀️ Testing, Configuration & Deployment

• update two screenshots @alisman (#4447)
• Fix typo in e2e spec @alisman (#4438)

🧰 Maintenance

• Update api clients @alisman (#4448)
• const in namespace columns e2e utils @BasLee (#4443)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.2.0...v5.2.1
• Frontend: v5.2.0...v5.2.1

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.2.0

🧬 Features

• [RFC 65] Display custom namespace columns in cna table @BasLee (#4418)

✨ Enhancements

• [RFC 66] Display custom namespace columns in struct var table @BasLee (#4424)

🐛 Bug Fixes

• Fix incorrect mutation frequency in group comparison lollipop plot @gblaih (#4432)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.1.10...v5.2.0
• Frontend: v5.1.10...v5.2.0

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.1.10

✨ Enhancements

• Always show label for pie chart when ratio is larger than 0.25 @dippindots (#4429)

🐛 Bug Fixes

• Fix gene panel column download in patient view page @dippindots (#4430)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.1.9...v5.1.10
• Frontend: v5.1.9...v5.1.10

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.1.9

✨ Enhancements

• Format group comparison lollipop plot y-axis label @gblaih (#4419)
• Do not show style attributes in timeline data table on patient page @alisman (#4427)
• Add user selected gene to the URL in group comparison lollipop plot @gblaih (#4426)

👷‍♀️ Testing, Configuration & Deployment

• Plots tab option validation did not allow for the "none" selected value @alisman (#4420)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.1.8...v5.1.9
• Frontend: v5.1.8...v5.1.9

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.1.8

✨ Enhancements

• Advert for AACR Genie portal at top of study list @alisman (#4416)

🐛 Bug Fixes

• Only allow expression profiles from tcga pancan in plots tab @alisman (#4409)

📐 Prototype (Internal Use)

• Left truncation adjustment for KM plot @dippindots (#4324) Test links: Study page Comparison page
• Lollipop plot (Mutation count/frequency) for group comparison page @gblaih (#4392) Test link

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.1.7...v5.1.8
• Frontend: v5.1.7...v5.1.8

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.1.7

✨ Enhancements

• Add spinner to iFrame of Resource Tabs @pvannierop (#4402)

🐛 Bug Fixes

• Sample profile alerts should only consider active samples @alisman (#4406)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.1.6...v5.1.7
• Frontend: v5.1.6...v5.1.7

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.1.6

🧬 Features

• Add feature flag store @alisman (#4398)

✨ Enhancements

• Add alerts to patient view pathway and gen. evo. tabs when samples are unprofiled @alisman (#4401)

🐛 Bug Fixes

• Fix bug where patient pathway lacks a CNA profile @alisman (#4403)
• Fix hidden columns when switching transcripts @leexgh (#4395)

⚙️ Changes to handle external APIs

• Update OncoKB Client @zhx828 (#4405)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.1.5...v5.1.6
• Frontend: v5.1.5...v5.1.6

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.1.5

✨ Enhancements

• Add alerts on patient view alteration tables when one sample of many is not profiled @alisman (#4391)
• Remove samples of overlapping patients in patient-level analysis @leexgh (#4390)

🐛 Bug Fixes

• Fix issue with annotation on patient view when using cohort navigation (refactor page to reinstatiate) @alisman (#4393)
• Fix infinite loop when study search query consists of single "or" @BasLee (#4394)
• Add testing library as prod dep @alisman (#4389)

👷‍♀️ Testing, Configuration & Deployment

• Use genomenexus.isoform_override_source serverprop @inodb (#4400)
• Remove rc from circeci jobs @alisman (#4397)

👷‍♀️ Testing, Configuration & Deployment

• Add e2e test for patient view cohort navigation and annotation results @alisman (#4396)

🕵️‍♀️ Full commit logs

• Backend: cBioPortal/cbioportal@v5.1.4...v5.1.5
• Frontend: v5.1.4...v5.1.5

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning