v2.0.0

COBREXA v2.0.0

Merged pull requests:

• backmerge the old master branch to keep history intact (#1) (@exaexa)
• separate the frontend functions from frontend-style builders and builders (#2) (@exaexa)
• fix doc paths (#3) (@exaexa)
• link everything to the docs (#4) (@exaexa)
• Small frontend cleaning things (#6) (@exaexa)
• Move log_concentration_constraints (#7) (@stelmo)
• Small changes to MMDF (#9) (@stelmo)
• Small fixes to unsigned (#10) (@stelmo)
• Functionalize constraint builder for enzymes (#11) (@stelmo)
• Implement SMoment (#12) (@stelmo)
• test&fix stuff (#15) (@exaexa)
• implement sampling (#16) (@exaexa)
• add some docstrings (#17) (@exaexa)
• add some docs (#18) (@exaexa)
• minor doc fixes (#19) (@exaexa)
• fix readme a bit (#21) (@exaexa)
• CompatHelper: bump compat for ConstraintTrees to 1, (keep existing compat) (#22) (@github-actions[bot])
• do not imply that shallow copying is supported (#23) (@exaexa)
• add the docker-building action (#24) (@exaexa)
• fix docker icon (ghcr gogogo) (#25) (@exaexa)
• update github things (#26) (@exaexa)
• fix performance of stoichiometry conversion in flux_balance_constraints (#27) (@exaexa)
• use the efficient JuMP substitutes, clean up the bounds transcription (#28) (@exaexa)
• source fixes from #20 (#30) (@exaexa)
• doc fixes from #20 (#31) (@exaexa)
• maintenance merge of the remainder of doc fixes (#33) (@exaexa)
• add the leftover misc tests (#34) (@exaexa)
• add notes about forwarding the project configuration (#36) (@exaexa)
• finalize the examples (#37) (@exaexa)
• efficiency: switch the larger sums to CT's pairwise sum (#39) (@exaexa)
• CompatHelper: bump compat for AbstractFBCModels to 0.3, (keep existing compat) (#40) (@github-actions[bot])
• add support for loading the coupling bounds from FBC (#41) (@exaexa)
• remove obsolete data loading from tests, add cph to misc.jl (#42) (@exaexa)
• hotpatch: this is no longer TODO (#43) (@exaexa)

Closed issues:

• sums should use the pairwise reduce (#38)