A cloud-based pipeline to estimate telomere lengths from WGS data using Telseq
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Updated
Apr 15, 2019 - WDL
A cloud-based pipeline to estimate telomere lengths from WGS data using Telseq
Bioinformatics workflows developed for and used on the St. Jude Cloud project.
A workflow for processing metagenomics data sets using Centrifuge. Category:Single-Sample
Workflow Description Language (WDL) test workflow. Write hardcoded messages to stdout. For testing Cloud WS APIs and the GA4GH Starter Kit.
Workflow Description Language (WDL) test workflow. Write custom messages as file outputs. For testing Cloud WS APIs and the GA4GH Starter Kit.
Focused on constructing a phylogenetic tree from Philippine strains of Candida albicans.
RNA binding workflow geared towards broad discovery of binding sites
WDL pipelines for the Sentieon tools
Broad fungal method repository
WDL tasks for commonly used BFX tools
A collection of tasks wrapped in WDL
This is the repository for the WDL and JSON files accompanying the WDL 101 course.
WDL workflow language program, developed for singlecell rna sequencing data analysis, maintained by @OOAAHH(SunHao) .
Workflow for metagenome assembly
Strelka2 somatic variant calling workflow
A repo containing workflows written in WDL to test using the Fred Hutch Cromwell configuration.
Self-contained WDL workflow that converts a WGS FASTQ file into an unmapped CRAM file
A demo repo to help folks run Star on RNA seq data and do DEseq2
Workflow to download paired fastqs from SRA and pass through STAR 2 pass
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