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@microbiomedata

National Microbiome Data Collaborative

National Microbiome Data Collaborative

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  1. nmdc-schema nmdc-schema Public

    National Microbiome Data Collaborative (NMDC) unified data model

    Python 27 8

  2. NMDC_documentation NMDC_documentation Public

    Document workflows, schemas, and portal

    2 3

Repositories

Showing 10 of 76 repositories
  • nmdc_notebooks Public

    Jupyter Notebooks demonstrating R and Python-based access to NMDC metadata and data

    microbiomedata/nmdc_notebooks’s past year of commit activity
    Jupyter Notebook 5 CC0-1.0 0 4 5 Updated Sep 20, 2024
  • nmdc-runtime Public

    Runtime system for NMDC data management and orchestration

    microbiomedata/nmdc-runtime’s past year of commit activity
    HTML 5 3 103 (6 issues need help) 11 Updated Sep 20, 2024
  • nmdc-edge Public

    Web-based interface to the NMDC EDGE platform

    microbiomedata/nmdc-edge’s past year of commit activity
    JavaScript 3 0 68 (1 issue needs help) 1 Updated Sep 19, 2024
  • external-metadata-awareness Public

    Tools for fetching and processing external schemas, ontologies and metadata records. Includes value set maintenance and some GitHub org exploration.

    microbiomedata/external-metadata-awareness’s past year of commit activity
    Python 0 0 11 1 Updated Sep 19, 2024
  • nmdc_automation Public

    Prototype automation

    microbiomedata/nmdc_automation’s past year of commit activity
    Python 2 2 39 3 Updated Sep 19, 2024
  • metaT Public

    Metatranscriptomics workflow

    microbiomedata/metaT’s past year of commit activity
    WDL 4 2 6 0 Updated Sep 19, 2024
  • issues Public

    public repo for issues related to NMDC work

    microbiomedata/issues’s past year of commit activity
    Jupyter Notebook 1 0 323 1 Updated Sep 19, 2024
  • nmdc-server Public

    Data portal client and server for NMDC.

    microbiomedata/nmdc-server’s past year of commit activity
    Python 8 0 164 16 Updated Sep 18, 2024
  • berkeley-schema-fy24 Public Forked from microbiomedata/nmdc-schema

    A fork of the nmdc-schema, for refactoring based on Monterey insights

    microbiomedata/berkeley-schema-fy24’s past year of commit activity
    Python 6 CC0-1.0 8 0 9 Updated Sep 18, 2024
  • nmdc-schema Public

    National Microbiome Data Collaborative (NMDC) unified data model

    microbiomedata/nmdc-schema’s past year of commit activity
    Python 27 CC0-1.0 8 367 (1 issue needs help) 27 Updated Sep 18, 2024
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