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@oicr-gsi

Genome Sequence Informatics

Repositories for OICR's Genome Sequence Informatics team

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  1. shesmu Public

    Decision-driven action launching system

    Java 8 4

  2. djerba Public

    Create cancer bioinformatics reports from metadata and workflow output

    Python 9 5

  3. vidarr Public

    Analysis provenance tracking server

    Java 1 1

  4. data_release Public

    Scripts for releasing data generated at OICR to stakeholders

    Python

Repositories

Showing 10 of 237 repositories
  • djerba Public

    Create cancer bioinformatics reports from metadata and workflow output

    Python 9 GPL-3.0 5 5 5 Updated Feb 13, 2025
  • shesmu Public

    Decision-driven action launching system

    Java 8 MIT 4 0 3 Updated Feb 13, 2025
  • Dragen-Align Public

    Lane Level (single fastq pair) alignments using Dragen

    WDL 0 0 0 1 Updated Feb 13, 2025
  • Dragen-somatic Public

    The Dragen somatic variant calling workflow

    WDL 0 0 0 0 Updated Feb 13, 2025
  • Dragen-germline Public

    workflow for running DRAGEN SNV caller in germline mode

    WDL 0 0 0 0 Updated Feb 13, 2025
  • somnus Public

    Service inhibitor service

    Java 0 0 0 1 Updated Feb 13, 2025
  • pinery Public

    A LIMS abstraction layer to provide generalized LIMS access via a web service.

    Java 1 GPL-3.0 0 0 0 Updated Feb 13, 2025
  • cerberus Public

    File provenance library

    Java 0 MIT 0 0 0 Updated Feb 13, 2025
  • variantMerging Public

    a workflow for combining variant calls from SNV analyses done with different callers

    Python 0 GPL-2.0 0 0 1 Updated Feb 12, 2025
  • vidarr Public

    Analysis provenance tracking server

    Java 1 MIT 1 0 1 Updated Feb 12, 2025

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