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@oicr-gsi

Genome Sequence Informatics

Repositories for OICR's Genome Sequence Informatics team

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  1. shesmu shesmu Public

    Decision-driven action launching system

    Java 8 4

  2. djerba djerba Public

    Create cancer bioinformatics reports from metadata and workflow output

    Python 9 6

  3. vidarr vidarr Public

    Analysis provenance tracking server

    Java 1 1

  4. data_release data_release Public

    Scripts for releasing data generated at OICR to stakeholders

    Python

Repositories

Showing 10 of 246 repositories
  • cardea Public

    Case data API

    oicr-gsi/cardea’s past year of commit activity
    Java 0 Apache-2.0 0 0 0 Updated Apr 4, 2025
  • Dragen-rnaseq Public

    RNAseq analysis with Dragen

    oicr-gsi/Dragen-rnaseq’s past year of commit activity
    0 MIT 0 0 0 Updated Apr 4, 2025
  • djerba Public

    Create cancer bioinformatics reports from metadata and workflow output

    oicr-gsi/djerba’s past year of commit activity
    Python 9 GPL-3.0 6 6 3 Updated Apr 4, 2025
  • vidarr Public

    Analysis provenance tracking server

    oicr-gsi/vidarr’s past year of commit activity
    Java 1 MIT 1 0 3 Updated Apr 4, 2025
  • methylDackel Public
    oicr-gsi/methylDackel’s past year of commit activity
    WDL 0 0 0 1 Updated Apr 4, 2025
  • delly Public

    Delly workflow produces a set of vcf files with different types of structural variant calls

    oicr-gsi/delly’s past year of commit activity
    WDL 1 2 0 0 Updated Apr 3, 2025
  • dimsum Public

    QC Tracking dashboard

    oicr-gsi/dimsum’s past year of commit activity
    Java 1 GPL-3.0 0 0 0 Updated Apr 3, 2025
  • pipeline-timings Public

    code for creating plots for review of pipeline/workflow run timings

    oicr-gsi/pipeline-timings’s past year of commit activity
    Python 0 0 0 0 Updated Apr 3, 2025
  • cBioPortal_Importer Public

    Scripts to facilitate loading data into cBioPortal

    oicr-gsi/cBioPortal_Importer’s past year of commit activity
    Python 0 0 0 0 Updated Apr 2, 2025
  • downSample Public
    oicr-gsi/downSample’s past year of commit activity
    WDL 0 0 0 0 Updated Apr 1, 2025
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