Detect iSNV and construct whole viral genomes from metagenomic samples

Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes

Viral genome coverage evaluation for metagenomic diagnostics 🩸

A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during de novo assembly.

A streamlined Oxford Nanopore Viral Metagenomics Pipeline

This is a pipeline for exploring viruses (ssDNA, dsDNA phage, and giant DNA viruses) and viral diversity in metagenomes.

Viral Metagenomics Assembly and Annotation Pipeline

Set of tools for viral metagenomics.

Viral genome assemble and characterisation

Uses k-means prediction to ascertain genomic sequences within ambiguously attributed fasta format data. The resulting cluster sequences are used to develop NCBI BLAST requests.

BEAR: viral diagnostic analysis pipeline for SARS-CoV-2

VStrains is a de novo approach for reconstructing strains from viral quasispecies.

Data portal and API for Center for Viral Systems Biology (CViSB) data

This repository contains the data and scripts used in Simulation Study of Viral Contiguous Sequence Identification Tools

Assembly and intrahost / low-frequency variant calling for viral samples