Uses k-means prediction to ascertain genomic sequences within ambiguously attributed fasta format data. The resulting cluster sequences are used to develop NCBI BLAST requests.

Data portal and API for Center for Viral Systems Biology (CViSB) data

This is a pipeline for exploring viruses (ssDNA, dsDNA phage, and giant DNA viruses) and viral diversity in metagenomes.

Viral genome assemble and characterisation

Detect iSNV and construct whole viral genomes from metagenomic samples

Viral Metagenomics Assembly and Annotation Pipeline

This repository contains the data and scripts used in Simulation Study of Viral Contiguous Sequence Identification Tools

BEAR: viral diagnostic analysis pipeline for SARS-CoV-2

A streamlined Oxford Nanopore Viral Metagenomics Pipeline

Viral genome coverage evaluation for metagenomic diagnostics 🩸

Set of tools for viral metagenomics.

VStrains is a de novo approach for reconstructing strains from viral quasispecies.

Assembly and intrahost / low-frequency variant calling for viral samples

A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during de novo assembly.

Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes