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Updated
May 30, 2018 - Shell
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variantcalling
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A complete pipeline for assembling and analyzing the SARS-CoV-2 genome from Illumina paired-end reads, featuring quality control, mapping, variant calling, consensus sequence generation, lineage annotation, and phylogenetic analysis. Designed for efficient and modular bioinformatics workflows.
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Updated
Jan 18, 2025 - Shell
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