A collection of WDL bioinformatic workflows to benchmark markers coming from different pipelines using linkage map quality as a diagnosis.

Calls Copy Number Variants on sequencing data from cancer patients

A pipeline that calls variants on a group of BAM files. Category:Multi-Sample

Strelka2 somatic variant calling workflow

Delly workflow produces a set of vcf files with different types of structural variant calls

Variant Calling and Annotation using PacBio Hi-Fi Reads

workflow that generates genotype fingerprints consumed by SampleFingerprinting workflow

Workflow that takes a fastq pair or optionally a chimeric file from STAR and detects RNA-seq fusion events.

Nanopore sequencing analysis pipelines

varscan repo contains code for Varscan workflow

Runs several variant callers that align an assembly to a reference

freec workflow - call CNV on your tumor wih optional normal