Classes and functions for use with bioinformatics.

Convert an standard VCF to JSON format

Convert genomic coordinates from the Human Genome version 19 (hg19) to version 38 (hg38)

Converts XLSX documents into VCF (Variant Call Format) - remastered for JDK1.8 2023

A WDL-based workflow for extraction of variants and their associated info from large VCF files

A standalone and free application to explore genetics variations from VCF file

Predicting true low-VAF SNVs in HPV using triplicate NGS samples and machine learning

A simple python implementation of Variant Call Format intersection and complements for identifying genetic mutations

Variant Calling with Deep Learning for Prokaryotic genomes using TensorFlow. Adds (0 <= P(Variant) <= 1) to VCF files under INFO as abbreviated "ACC=".

A utility to merge a large number of VCF files incrementally

A Haskell script that performs basic parsing on the default output of ensembl-vep and variant-calling format (vcf) files.

SAMtools and BCFtools (v1.10) for manipulating next-generation sequencing data, from bioconda

A Haskell script for selecting variants from a variant calling format (vcf) file based on variants present in a mgibed file.

Your VCF converted to XLS from now. VCF stands for Variant Call Format and it is used by bioinformatics projects to encode structural genetic variants.

High-throughput Tabular Data Processor (HTDP)