Same species annotation lift over pipeline.

liftover for python, made fast with cython

FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.

A fast and efficient tool for converting chromatin interaction data between genome assemblies

🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies

A Nextflow workflow to generate lift over files for any pair of genomes

This toolkit deals with GEnomic sequence and genome structure ANnotation files between inbreeding lines and species.

Lifterover copy number segments in whole

An efficient genetic data imputation pipeline

Variant translation library for Clojure

A crate for working with genomics chain files.

Go Language implementation of LiftOver

a python pipeline to generate chain files between different genome assemblies for LiftOver.

Perform liftover on plink files

Repository for miscellaneous bioinformatics scripts that may be useful to others.

Scripts for making chain file for mm10 - ms10 liftover

A Snakemake Workflow for using PolyA_DB and UCSC LiftOver with CellRanger

Fast liftover

A Go-written server for 23andMe-formatted raw data liftover

Convert genomic coordinates from the Human Genome version 19 (hg19) to version 38 (hg38)