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intrahost-genetic-diversity

Here are 3 public repositories matching this topic...

chasewnelson / Soni-response

Scripts, analysis code, input data, and intermediate files for response to Soni et al.

diversity evolution slim nucleotide natural-selection nucleotide-diversity covid-19 sars-cov-2 evolutionary-simulation intrahost-genetic-diversity intrahost

Updated Apr 20, 2024
R

NCI-CGR / HPV_low_VAF_SNV_prediction

Predicting true low-VAF SNVs in HPV using triplicate NGS samples and machine learning

machine-learning vcf cancer-genomics variant-calling snv vcf-files ngs-analysis hpv ion-torrent variant-call-format single-nucleotide-variation extreme-gradient-boosting intrahost-genetic-diversity intrahost vcfgenie human-papillomavirus isnv

Updated Mar 12, 2024
Jupyter Notebook

denv-scripts

mpds / denv-scripts

DOI: 10.1128/Spectrum.00256-21

disease-severity denv-2 intrahost-genetic-diversity

Updated May 20, 2022
Jupyter Notebook

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