Feature-rich Python implementation of the tximport package for gene count estimation.

Perform differential analysis from FastQ files with Salmon, tximport, and DESeq2

Performed a differential gene expression analysis with RNA-seq that compares the expression in human control breast cancer cell lines with lines treated by silencing the NRDE2 gene. A Salmon + tximport + DESeq2 workflow was conducted to pursue this.

Análises de expressão diferencial de dados de sequenciamento de segunda geração (high-throughput sequencing reads, RNA-seq) realizadas utilizando as ferramentas kallisto.

docker file for genomic tools

Análise de RNA-seq - Abundância de Transcritos Utilizando kallisto, tximport e DESeq2

Snakemake workflow for Bulk RNASeq at both genome level and transcripts level.

RNA-seq workflow: gene-level exploratory analysis and differential expression.