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@complextissue

Complex Tissue lab

Research group led by Prof. Victor Puelles, PhD, at Aarhus University.
README.md

Welcome to our GitHub page. We are a research group at Aarhus University, part of the Department of Clinical Medicine and the Department of Pathology.

Our research focus is the study of complex tissues using advanced imaging techniques and machine learning and AI techniques.

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  1. pytximport pytximport Public

    Feature-rich Python implementation of the tximport package for gene count estimation.

    Python 35 2

Repositories

Showing 10 of 12 repositories
  • pertpy Public Forked from scverse/pertpy

    Perturbation Analysis in the scverse ecosystem.

    complextissue/pertpy’s past year of commit activity
    Python 0 MIT 30 0 0 Updated Apr 7, 2025
  • pyclustree Public

    A Python alternative to `clustree` for assessing single-cell RNA-sequencing clusters.

    complextissue/pyclustree’s past year of commit activity
    Python 4 GPL-3.0 0 0 0 Updated Mar 29, 2025
  • pytximport Public

    Feature-rich Python implementation of the tximport package for gene count estimation.

    complextissue/pytximport’s past year of commit activity
    Python 35 GPL-3.0 2 0 0 Updated Mar 26, 2025
  • pasta Public Forked from robinsonlabuzh/pasta

    Pattern Analysis of SpaTial omics datA

    complextissue/pasta’s past year of commit activity
    TeX 0 1 0 0 Updated Mar 13, 2025
  • decoupler-py Public Forked from saezlab/decoupler-py

    Python package to perform enrichment analysis from omics data.

    complextissue/decoupler-py’s past year of commit activity
    Python 0 GPL-3.0 28 0 0 Updated Jan 28, 2025
  • k-DBCV Public Forked from Kaufman-Lab-Columbia/k-DBCV

    High speed implementation of Density Based Cluster Validation (DBCV)

    complextissue/k-DBCV’s past year of commit activity
    Python 0 MIT 2 0 0 Updated Jan 23, 2025
  • easySCFr Public Forked from xleizi/easySCF
    complextissue/easySCFr’s past year of commit activity
    R 1 4 0 0 Updated Nov 27, 2024
  • PyDESeq2 Public Forked from owkin/PyDESeq2

    A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

    complextissue/PyDESeq2’s past year of commit activity
    Python 0 MIT 73 0 0 Updated Nov 5, 2024
  • multiSPAETI Public Forked from HiDiHlabs/multiSPAETI

    Implementation of MULTISPATI-PCA in Python

    complextissue/multiSPAETI’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Nov 1, 2024
  • snakemake-bulk-rna-seq-workflow Public

    Snakemake workflow for bulk RNA sequencing with pytximport.

    complextissue/snakemake-bulk-rna-seq-workflow’s past year of commit activity
    Python 4 GPL-3.0 0 0 0 Updated Sep 30, 2024
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