#

refseq

Here are 11 public repositories matching this topic...

pirovc / ganon

ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseq/genbank), taxonomic profiling (ncbi/gtdb), binning and hierarchical classification, customized reporting and more

bioinformatics taxonomy bloom-filter metagenomics genbank microbiome k-mer ncbi refseq minimizers gtdb

Updated Apr 10, 2025
Python

referenceseeker

oschwengers / referenceseeker

Rapid determination of appropriate reference genomes.

bioinformatics microbiology wgs mash ani refseq reference-genomes

Updated Jan 22, 2025
Python

ClementLancien / convertToEntrezGeneID

Download biological databas, extract database identifier and entrez gene identifier, insert in a mongo database

gene database mongodb history vega gpl info homologene refseq gi entrezgene geneulike genebank swissprot trembl unigene

Updated Aug 31, 2017
Python

IsoAligner

JacobHanimann / IsoAligner

IsoAligner: dynamic mapping of amino acid positions across protein isoforms

bioinformatics alternative-splicing protein-sequences sequence-to-sequence ucsc sequence-alignment uniprot-ids amino-acid-sequence aminoacid needleman-wunsch-algorithm refseq splice-variants exon-mapping protein-ids aminoacid-position protein-isoform

Updated Jun 14, 2022
Python

g-insana / ortho2tree

Pipeline for the selection of canonical proteins for reference proteomes

uniprot isoforms msa refseq canonical proteomes

Updated Jun 3, 2025
Python

mtp-usz / IsoAligner

IsoAligner: dynamic mapping of amino acid positions across protein isoforms

rest-api alternative-splicing ensemble webtool ucsc uniprot sequence-alignment protein-sequence refseq splice-variants exon-mapping protein-ids aminoacid-position protein-isoform

Updated May 4, 2022
Python

mr-eyes / orthodb-refseq-mapper

Mapping RefSeq RNA to OrthoDB (Under Development)

ncbi refseq orthologs orthology-relationships orthodb

Updated Feb 16, 2019
Python

hunglin59638 / makura

NCBI Genome downloader

python bioinformatics taxonomy genbank ncbi genome-assembly refseq

Updated Mar 19, 2023
Python

forestdussault / download_refseq

⬇️ Facilitates downloading NCBI's RefSeq with a human-readable file structure

taxonomy ncbi refseq

Updated Nov 9, 2017
Python

bielasilva / mock_ncbi_download

Randomly download genomes from NCBI RefSeq and Genbank

databases genbank genomes refseq

Updated Oct 30, 2020
Python

GENCARDIO / build_gene_transcript_db

Get the latest gene-transcript identifiers using Ensembl, RefSeq, MANE and LRGs models.

ensembl transcripts isoforms gencode refseq

Updated Oct 4, 2023
Python

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