Software for cleaning fastq reads with or without adapter list

This library content most interesting reads for any mobile developer and another. All book's will be added our member's for you!

📚 A list of physical books I own or want to read.

Temperature, Relative Humidity, Atmospheric Pressure Logger program, displays and saves data to a csv file

Assembled Phi-X174 genome using Overlap Graph, Kmer Composition and De-Bruijn Graph.

📚My reads project. A Book Tracking App.

Sanyojan is a highly sensitive, hybrid genome assembler.

Heterozygous aware long reads corrector !

a simple in-memory key-value (KV) store as a client-server application running over TCP sockets,

Complete Pipeline for RNA-seq data analysis: From FastQ to differntial gene expression to annotated Variations.

GPSeq sequencing data analysis pipeline

Filter alignments on sequence length and/or identity of first nucleotide.

A Raspberry Pi Simple python Stand Alone Local Network Web Server. Automatically reads folder and file entries into a right pane selection list. Selected folder opens a new browser tab and Selected file displays content in browser left pane iframe. Right pane list can be ordered by date/time or alphabetic ascending or descending via settings.py …

Hybrid method based on a variable-order de bruijn Graph for the error Correction of Long Reads

Python code to detect ECGR Mutations; Takes a reference genome and bunch of reads as input and finds mutations (1-3 bp length) where number of supporting reads greater than 5

Python code to compute adatper content in reads, kmer content, per-base-GC content (at a specific position in a read alignment, against reference genome), per base NC content (at a specific position in a read alignment against the reference genome), per base seq quality (across aligned reads), per base sequence content, per base quality scores, …

A tool to index and extract data from gzipped FASTQ files

Preprocessing of raw reads obtained using ARTIC's protocol for sequencing SARS-CoV-2 genome.

Convert NGS reads to analysis ready variants with GATK's ReadsPipelineSpark