Construct and Analyze the North American Vitis pangenome
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Dec 21, 2023 - R
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pangenomics
Here are 8 public repositories matching this topic...
Scripts for Hill et al. (2025) doi:10.1186/s12864-025-11432-0 🌾
bioinformatics phylogenetics genome-annotation comparative-genomics fungi phylogenomics genome-assembly pangenomics
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Mar 13, 2025 - R
Extension to the Crop Haplotypes website showing shared haplotypes between wheat genome assemblies. Enables mapping genomic regions of interest to the assemblies and calculate quality parameters such as alignment density or continuity
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Dec 21, 2024 - R
Pangenomic Statistical analysis in R (pasaR)
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Feb 27, 2018 - R
Functions for working with NCBI's Pathogen Detection data
bioinformatics r comparative-genomics pangenomics bacterial-genomes pathogenomics pathogen-detection ncbi-pathogens
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Apr 2, 2024 - R
Repository dedicated to the experiment section of the paper: Revisiting pangenome openness with k-mers. PCJ Math & Comp Biol. (2024).
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Aug 1, 2024 - R
This repository contains an R script for generating Circos plots to visualize accessory gene presence-absence patterns and expression levels in *Streptococcus pneumoniae* serotype 3. It compares clade I (PT8465) and clade II (ND6401) strains, highlighting differences in gene expression and adaptation.
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Mar 2, 2025 - R
PAPi (Pangenome Analysis Pipeline)
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May 29, 2020 - R
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