Panacus is a tool for computing statistics for GFA-formatted pangenome graphs

Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions

Practical Haplotype Graph (PHG) version 2

strange pangenome and large graph visualization

Repository for the FantasticLamp pipeline

Library to parse, edit and handle in memory GFA graphs

Analysis of shared parts of a pangenome

ODGI: understanding pangenome graphs (https://doi.org/10.1093/bioinformatics/btac308)

Notes upon pangenome graphs construction

Alignment of Pangenome Graphs with Ricci Flow

Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.

Scripts for de-novo genome assembly, assembly polishing, QC and post-assemble analyses of HiFi whole genome sequence data and downstream pangenomics analyses to identify structural variants

Leveraging WES short reads for PAN-EXOME creation and analysis.

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