Metabolic Engineering Workbench
Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host with or without metabolomics data
Metabolic Drug Repurposing Pipeline
A modern Python library for converting Mass Spectrometry Imaging (MSI) data into standardized SpatialData/Zarr format, enabling seamless integration with spatial omics analysis workflows.
Code to reproduce preprocessing analysis of IBD dataset from the Human Microbiome Project. This work will provide a walk through analysis tool for the scientific community with less technical knowledge on data science and machine learning.
diversity-based enumeration of optimal context-specific metabolic networks using the cobrapy library
This is a package for visualizing and analyzing multiple metabolic models. It also allow users to integrate omic data, metabolic tasks, and medium data with genome-scale metabolic models (GEMs).
Functionality to preprocess and analyse multi-omics data
Tool for the reconstruction of context-specific metabolic models based on omics data from several sources
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