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spatialdata

Here are 8 public repositories matching this topic...

gustaveroussy / sopa

Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoCycler / MACSima / etc)

snakemake pipeline memory-management generalization spatial-transcriptomics spatialdata multiplexed-imaging spatial-omics

Updated Nov 7, 2024
Python

osgeonepal / geotile

GeoTile is the python library for tiling the geographic raster data (eg. Tiff etc)

python tiles tiff gis tiling raster remote-sensing satellite-imagery map-tiles spatialdata geotiler tiling-image geotile gistile tiff-tile

Updated Sep 9, 2024
Python

Spatial-Data-Science-and-GEO-AI-Lab / GreenExp_R

This is a R toolkit and developer version package to estimate multidimensional aspects of greenness and nature exposure, such as availability, accessibility and visibility using various geospatial data and models

osm spatial-analysis satellite-data nature greenspace spatialdata

Updated Nov 14, 2023
R

quentinblampey / spatialdata_xenium_explorer

Interoperability between SpatialData and the Xenium Explorer

visualization spatial-analysis 10xgenomics spatialdata spatial-omics

Updated Jul 31, 2024
Python

metaspace2020 / metaspace-converter

Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData

python metaspace anndata spatialdata scverse

Updated Mar 16, 2024
Python

srivarra / anatomize

Xarray powered multidimensional-image analysis toolkit.

python xarray numba single-cell-analysis spatial-transcriptomics anndata spatialdata

Updated Oct 14, 2024
Python

elicolu / mh-centre_v1

Geospatial Ontology to support the Documentation of Minor Historical Centres

rdf owl ontology datamodel spatialdata

Updated May 5, 2022

InmaculadaRM / LiveBirthsMap

Live births in Scotland 2021 - Exercise on spatial vector data with R - RMarkdown file

map r geospatial spatial public-health rprogramming scotland health-data-analysis spatialdata

Updated Aug 31, 2024
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