PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files
-
Updated
Aug 15, 2024 - C++
#
linkage-disequilibrium
Here are 35 public repositories matching this topic...
Causal Mixture Model for GWAS summary statistics
-
Updated
Dec 12, 2023 - C
LDlinkR
linkage-disequilibrium r-package population-genetics r-stats ldlink ld-calculator ldlink-api ldlink-webtool
-
Updated
Apr 17, 2024 - R
Fast calculations of linkage-disequilibrium in large-scale human cohorts
-
Updated
Nov 9, 2019 - C++
Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.
-
Updated
Jan 20, 2023 - R
🔖 Get SNP proxies from the 1000 Genomes Project.
-
Updated
Oct 4, 2018 - R
LDlink is a suite of web-based applications designed to easily and efficiently interrogate linkage disequilibrium in population groups. Each included application is specialized for querying and displaying unique aspects of linkage disequilibrium.
linkage-disequilibrium population-genetics haplotype-blocks genome-wide-association-studies single-nucleotide-polymorphisms ld-analysis ld-statistics ld-visualization
-
Updated
Dec 16, 2024 - Python
Adjacency-constrained hierarchical clustering of a similarity matrix
-
Updated
Oct 8, 2024 - R
Modeling and Analysis of (Statistical) Genetics data in python
-
Updated
Dec 3, 2024 - Python
Genomewide Epistasis Analysis on Bacteria
bioinformatics linkage-disequilibrium microbial-genomics epistasis-analysis bacterial-genome-analysis
-
Updated
Sep 17, 2024 - R
ldshrink: a one-stop R package for shrinkage estimation of linkage disequilibrium
-
Updated
Mar 31, 2021 - C++
Efficient Local Ancestry Inference
-
Updated
Apr 2, 2024 - C++
📙 Explore 1000 Genomes variant data with JavaScript.
-
Updated
Sep 14, 2018 - JavaScript
This is web server API for http://topld.genetics.unc.edu
-
Updated
Mar 1, 2022
ld-tools: toolkit for linkage disequilibrium calculation designed to work locally
python bioinformatics linkage-disequilibrium sqlite snp ld vigg pysam ldlink ld-calculator haploreg ld-tools
-
Updated
Feb 28, 2024 - Python
GWAS Pre-Processing Pipeline
quality-control gwas linkage-disequilibrium pca quality-assurance quality-metrics 1000genomes gwas-pipeline hardy-weinberg-equilibrium heterozygosity minor-allele-frequency identity-by-descent
-
Updated
Nov 6, 2019 - Python
A python library to develop genomic data simulators
gwas linkage-disequilibrium simulator genomics simulation vcf dna population-genomics microarray-data population-genetics dna-sequences vcf-files gwas-dataset allele-frequencies hardy-weinberg-equilibrium genomics-data
-
Updated
Aug 29, 2023 - Python
Get information about direction of agreement for any two lists of SNPs, based on LDlink and plink
-
Updated
Sep 18, 2019 - Python
Generating a weighed average of LDSTORE matrices for locus-based fine-mapping.
-
Updated
Mar 19, 2021 - R
Improve this page
Add a description, image, and links to the linkage-disequilibrium topic page so that developers can more easily learn about it.
Add this topic to your repo
To associate your repository with the linkage-disequilibrium topic, visit your repo's landing page and select "manage topics."